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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
gui
/ Jalview2XML.java
2016-08-19
Jim Procter
JAL-2154 reorder the dataset sequences according to...
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commitdiff
2016-08-19
Jim Procter
JAL-2154 belt-and-braces patch:
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commitdiff
2016-08-19
Jim Procter
JAL-2154 verify mapping’s sequenceI ref has been resolv...
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commitdiff
2016-08-01
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into develop
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commitdiff
2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
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commitdiff
2016-07-29
Jim Procter
JAL-2154 disable visual delay only after completed...
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commitdiff
2016-07-29
Jim Procter
JAL-2154 register any new dataset codon frames only...
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commitdiff
2016-07-29
Jim Procter
JAL-2154 only include mappings in dbref/alcodon in...
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commitdiff
2016-07-27
Jim Procter
JAL-2154 toString for forward references
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commitdiff
2016-07-27
Jim Procter
JAL-2163 set title for the alignframe from restored...
patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles
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commitdiff
2016-07-27
Jim Procter
JAL-2156 resolve and add complementary views for saveAl...
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commitdiff
2016-07-27
Jim Procter
JAL-2156 refactor saveState & saveAlignment to common...
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commitdiff
2016-07-24
Jim Procter
JAL-2154 formatting
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commitdiff
2016-07-24
Jim Procter
JAL-2154 keep track of incomplete sequences and report...
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commitdiff
2016-07-24
Jim Procter
JAL-2154 systematic pattern for defining/resolving...
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commitdiff
2016-07-23
Jim Procter
JAL-2154 patch the hack (Jalview2XML tests pass)
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commitdiff
2016-07-20
gmungoc
JAL-2154 poke JSeq start/end into Vamsas sequence
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commitdiff
2016-07-20
gmungoc
JAL-2023 avoid writing / loading empty mappings
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
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commitdiff
2016-06-29
gmungoc
JAL-1369 fix bug reloading a project with group sequenc...
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commitdiff
2016-06-27
gmungoc
tidied loop with generic iteration / loop variable
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
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commitdiff
2016-06-21
Jim Procter
JAL-1369 mark reference sequence & view state and resto...
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commitdiff
2016-06-21
Jim Procter
JAL-1369 project XML efficiency TODO
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commitdiff
2016-06-21
Jim Procter
JAL-1369 dead code TODO?
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commitdiff
2016-06-21
Jim Procter
JAL-1369 ensure *real* alignment’s metadata written...
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commitdiff
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
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commitdiff
2016-03-07
gmungoc
JAL-2023 CDS sequences added to / share alignment dataset
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commitdiff
2016-02-24
gmungoc
JAL-2015 JAL-1956 rollout of FeatureColourI in place of
JAL-1956_featureStyles
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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commitdiff
2015-12-22
gmungoc
JAL-653 hold AlignedCodonFrame collections as list...
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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commitdiff
2015-09-25
gmungoc
JAL-1815 restore split frame geometry correctly includi...
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commitdiff
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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commitdiff
2015-09-16
gmungoc
JAL-1885 small fix to isVersionStringLaterThan plus...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-09-03
gmungoc
JAL-1690 scaleProteinAsCdna new optional attribute...
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commitdiff
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
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commitdiff
2015-07-23
Jim Procter
Merge branch 'features/JAL-1759jmolUpdate' into develop
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commitdiff
2015-07-23
Jim Procter
JAL-1759 formatting
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commitdiff
2015-07-23
Jim Procter
JAL-1759 reinstate changes from bdfde6ef989da0702cef90f...
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2015-07-23
Jim Procter
JAL-1759 formatting
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commitdiff
2015-07-08
gmungoc
JAL-1759 merge from develop
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commitdiff
2015-07-07
tcofoegbu
JAL-1769 fixed output to jalview (.jpv) file in headles...
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commitdiff
2015-07-03
gmungoc
JAL-892 1 second delay for correct initial rendering...
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commitdiff
2015-06-30
gmungoc
JAL=1759 fix Jmol state command bug; remove debug output
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2015-06-22
gmungoc
JAL-892 tidy Varna panel names; JAL-1789 simplified...
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commitdiff
2015-06-19
gmungoc
JAL-892 check viewer is linked to alignment panel on...
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commitdiff
2015-06-18
gmungoc
JAL-892 JAL-1779 save/restore Varna viewer to/from...
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commitdiff
2015-06-18
gmungoc
JAL-1781 annotation.sequenceRef now sequence id not...
features/JAL-1781annotationXmlIds
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commitdiff
2015-06-17
gmungoc
JAL-1588 restore ChimeraViewFrame geometry as well
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commitdiff
2015-06-10
gmungoc
Merge remote-tracking branch
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commitdiff
2015-06-10
gmungoc
JAL-1764 save Chimera/Jmol state as separate entries...
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
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2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
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commitdiff
2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
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commitdiff
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
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commitdiff
2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
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commitdiff
2015-01-09
gmungoc
JAL-1588 check Chimera session file still exists
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commitdiff
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
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commitdiff
2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
Release_2_8_2_Branch
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
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commitdiff
2014-11-27
Jim Procter
JAL-1177 JAL-905 cannot recover sequences from dataset...
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commitdiff
2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
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2014-11-14
Charles Ofoegbu
House keeping
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
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commitdiff
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
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2014-09-23
darolmar
JAL-1355
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2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
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2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
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