JAL-2668 fix broken factory method for colour scheme
[jalview.git] / src / jalview / gui / Preferences.java
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2018-02-19 gmungocJAL-2629 refactoring of Hmmer preferences
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO

2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-09-01 TZVanaaltenJAL-2629 fix hmmbuild validation failing if no AlignFra...
2017-08-31 kiramtJAL-2527 Updates following code review
2017-08-30 kiramtJAL-2527 Added default setting/resetting and first...
2017-08-29 kiramtJAL-2527 Added overview prefs - don't get picked up...
2017-08-28 kiramtJAL-2527 Started adding overview preferences
2017-08-28 TZVanaaltenJAL-2629 fix HMMER validation fail due to checking...
2017-08-25 TZVanaaltenJAL-2629 add ability to add and select a DB for hmmsearch
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-16 TZVanaaltenJAL-2629 add hmmbuild validation check which also gets...
2017-08-15 TZVanaaltenJAL-2629 add checks for executing hmmer commands as...
2017-08-15 tzvanaaltenJAL-2629 fix file loading issues on Mac
2017-08-15 TZVanaaltenJAL-2629 add HMMER version check
2017-08-15 TZVanaaltenJAL-2629 the HMMER tab is now disabled when HMMER is...
2017-08-14 TZVanaaltenJAL-2629 add validation for HMMER path
2017-08-13 TZVanaaltenJAL-2629 add HMMER tab in preferences menu
2017-08-08 TZVanaaltenJAL-2629 add ability to select hmmer binaries folder
2017-07-25 TZVanaaltenJAL-2629 add non-functional HMMER menu
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 kiramtJAL-2316 Added database name column to URL links table...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-15 kiramtJAL-2316 Changes following review.
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-12 kiramtJAL-2316 Added GUI checks for duplicate link ids
2016-12-12 kiramtJAL-2316 Unit test update to UrlLinkTableModel and...
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-12-05 kiramtJAL-2316 Added UrlProvider factories. Tidied up labelling.
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
2016-12-02 kiramtJAL-2316 GUI updates to Connections tab in Preferences...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFurther tweaks to get tests passing
2016-11-15 kiramtJAL-2316 Moved url providers into own package
2016-11-15 kiramtJAL-2316 Refactoring of functionality to provide urls...
2016-11-14 kiramtUrl links changes - incomplete checkin as battery low
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links...
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well...
2016-10-22 kiramtWorking links menu
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file.
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each...
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save...
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text...
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-04-14 gmungocJAL-1421 type parameter added to some collections
2016-04-12 gmungocJAL-2050 only hide introns if exons are present! Remove...
2016-04-11 gmungocJAL-1705 (new preference option to) hide introns when...
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference...
2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label...
2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width...
2015-08-18 tcofoegbuJAL-1835 added UI for BioJSON embbeding preference
2015-04-13 gmungocJAL-1695 new property ENABLE_SPLIT_FRAME
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if...
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct...
2014-11-17 gmungocJAL-1586 chimera file chooser added, validate on OK...
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ...
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ...
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-09-23 darolmarJAL-1355
2014-09-19 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
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