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Merge branch 'JAL-1319_jronn_npe' into Release_2_8_Branch
[jalview.git]
/
src
/
jalview
/
gui
/
2011-10-27
jprocter
(JAL-969) fix logic bug introduced during refactoring
tree
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commitdiff
2011-10-27
jprocter
(JAL-969) removed TODOs
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commitdiff
2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
tree
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commitdiff
2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
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commitdiff
2011-10-21
jprocter
extend alignPanel api with OOMHandler call to raise...
tree
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commitdiff
2011-10-21
jprocter
remove unnecessary import
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commitdiff
2011-10-14
jprocter
(JAL-958) - normalised sequence logo for applet
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commitdiff
2011-10-11
jprocter
normalised logo rendering (JAL-958)
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commitdiff
2011-10-10
jprocter
(JAL-957) change splash screen and about to HTML text...
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-10-07
jprocter
merge Jan and Lauren's RNA GUI changes into develop...
tree
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commitdiff
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
tree
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commitdiff
2011-09-27
jprocter
same overzeaolous logic (JAL-915)
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2011-09-26
jprocter
tweaked dialog layout. should consider refactoring
tree
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commitdiff
2011-09-26
jprocter
make news window a modal dialog on the jalview desktop...
tree
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commitdiff
2011-09-26
jprocter
avoid deprecation and ensure dialog close event is...
tree
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commitdiff
2011-09-25
jprocter
organise imports
tree
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commitdiff
2011-09-25
jprocter
more focus fixing (JAL-943)
tree
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commitdiff
2011-09-25
jprocter
fix logic to ensure first check for news is correct...
tree
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commitdiff
2011-09-23
jprocter
try even harder to get focus - for benefit of windows...
tree
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commitdiff
2011-09-23
jprocter
ensure blog window gets put to front after dialogs...
tree
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commitdiff
2011-09-22
jprocter
refactor and remove excess imports (JAL-943)
tree
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commitdiff
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
tree
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commitdiff
2011-09-16
jprocter
JAL-747 - made warning message friendlier and more...
tree
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commitdiff
2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
tree
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commitdiff
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
tree
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commitdiff
2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
tree
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commitdiff
2011-09-15
jprocter
JAL-860 fixed grammar for one structure vs many structu...
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commitdiff
2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - refactor to use label font functions
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - refactor to use label font functions
tree
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commitdiff
2011-09-14
jprocter
JAL-934 - standard label font functions
tree
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commitdiff
2011-09-14
jprocter
patch for NPE (not clear if NPE is evidence of deeper...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
tree
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commitdiff
2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 rsbs service editing
tree
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commitdiff
2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
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commitdiff
2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
tree
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commitdiff
2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
tree
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commitdiff
2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
tree
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commitdiff
2011-08-28
janengelhardt
Including of VARNAv-3.9;
tree
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commitdiff
2011-08-25
jprocter
constructor only needs GUI container interface
tree
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commitdiff
2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
tree
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commitdiff
2011-08-25
jprocter
debug dialog
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commitdiff
2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
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commitdiff
2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
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commitdiff
2011-08-18
jprocter
remove debug message
tree
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commitdiff
2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
tree
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commitdiff
2011-08-18
jprocter
minor efficiency refactor
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commitdiff
2011-08-17
jprocter
JAL-853 use service action attribute to index services...
tree
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commitdiff
2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
tree
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commitdiff
2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
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commitdiff
2011-08-17
jprocter
fix for JAL-888
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commitdiff
2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
tree
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commitdiff
2011-08-16
janengelhardt
JAL-842; Text element containing the structure is not...
tree
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commitdiff
2011-08-15
janengelhardt
JAL-891; Tooltips for Structure logos implemented;
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commitdiff
2011-08-15
janengelhardt
JAL-878; Structures associated to a sequence are availa...
tree
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commitdiff
2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
tree
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commitdiff
2011-08-15
janengelhardt
JAL-891; Sorting of Structure logo implemented; bug...
tree
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commitdiff
2011-08-11
jprocter
avoid NPE for null annotation element columns JAL-896
tree
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commitdiff
2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
tree
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commitdiff
2011-08-10
janengelhardt
JAL-885; Structure conservation row is just added if...
tree
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commitdiff
2011-08-09
janengelhardt
JAL-891; base-pair logos can now be activated for structure
tree
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commitdiff
2011-08-08
janengelhardt
JAL-891; structure logo is adapted to two char's; Missi...
tree
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commitdiff
2011-08-08
janengelhardt
JAL-891; sequence logos are available on structure...
tree
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commitdiff
2011-08-05
jprocter
allow several progress bars on the desktop window ...
tree
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commitdiff
2011-08-04
jprocter
JAL-896 - patch to ensure arrows in different direction...
tree
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commitdiff
2011-08-04
jprocter
JAL-883 - refactored and debugged arrow, stem and helix...
tree
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commitdiff
2011-07-31
janengelhardt
JAL-885; StructureConservation row is displayed at...
tree
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commitdiff
2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
tree
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commitdiff
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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commitdiff
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
tree
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commitdiff
2011-07-25
janengelhardt
some print statements to test things
tree
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commitdiff
2011-07-25
janengelhardt
JAL-882; VARNA crashed when non-standard gaps where...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-878; Additional structures with a 'GR' tag in Stock...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; Implement transmitting of Jalview Sequence...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842: some bugfixes;
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commitdiff
2011-07-25
janengelhardt
JAL-842; Added the TextField to edit structure in VARNA
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; trimming single structures for single sequence...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; Give Varna frames name for window organizer...
tree
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commitdiff
2011-07-25
janengelhardt
Varna external frame bug solved
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commitdiff
2011-07-25
janengelhardt
Reorganize the class structure, unfortunately breaks...
tree
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commitdiff
2011-07-25
janengelhardt
clean code
tree
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commitdiff
2011-07-25
janengelhardt
Further structure accessing feature
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commitdiff
2011-07-25
janengelhardt
Changed location of VARNAv3-8b.jar; small changes
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commitdiff
2011-07-25
janengelhardt
jal-842; sequence transmitting to Varna included
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commitdiff
2011-07-25
janengelhardt
JAL-842, AppVarnaBinding was filled with a minimalistic...
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commitdiff
2011-07-25
janengelhardt
JAL-842, Further creation of VARNA classes (probably...
tree
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commitdiff
2011-07-25
janengelhardt
Container for VARNA classes are created according to...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
tree
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commitdiff
2011-07-25
janengelhardt
Start merging of Laurens Code
tree
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commitdiff
2011-07-25
janengelhardt
New branch created and author list changed to test...
tree
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commitdiff
2011-07-22
jprocter
todo for JAL-860 - associate multiple sequences with...
tree
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commitdiff
2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
tree
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commitdiff
2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
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commitdiff
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