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Merge branch 'Release_2_8_2_Branch' of https://source.jalview.org/git/jalview.git...
[jalview.git]
/
src
/
jalview
/
gui
/
2014-10-07
gmungoc
JAL-1264 wip
tree
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commitdiff
2014-10-07
gmungoc
JAL-1554 handle left-then-right click on sequence id
tree
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commitdiff
2014-10-03
Jim Procter
JAL-1355 removed all top level html tags from message...
tree
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commitdiff
2014-10-03
gmungoc
JAL-1264 javadoc update
tree
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commitdiff
2014-10-03
gmungoc
JAL-1506 delete all warning; JAL-1264 show/hide annotations
tree
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commitdiff
2014-10-03
gmungoc
JAL-1264 refactored show/hide annotation types includin...
tree
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commitdiff
2014-10-03
gmungoc
JAL-1481 search expression validation
tree
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commitdiff
2014-10-03
gmungoc
JAL-914 don't open help window twice
tree
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commitdiff
2014-10-03
Jim Procter
Merge branch 'Release_2_8_2_Branch' into Release_2_8_2_...
tree
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commitdiff
2014-09-26
darolmar
JAL-1355
tree
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commitdiff
2014-09-25
gmungoc
JAL-1264 tidy up use of MouseListener for showHideAnnot...
tree
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commitdiff
2014-09-25
gmungoc
JAL-1264 alternative (popup menu) way to show/hide...
tree
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commitdiff
2014-09-24
gmungoc
JAL-1264 further refactoring of panel + unit tests
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
2014-09-18
gmungoc
Merge branch 'JAL-1360_Branch' into Release_2_8_2_Branch
tree
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commitdiff
2014-09-18
gmungoc
JAL-1360 Javadoc, Vector replaced with ArrayList, code...
tree
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commitdiff
2014-09-18
gmungoc
JAL-1360 refactored utility method to ColorUtils class
tree
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commitdiff
2014-09-17
gmungoc
Correct colour for text when colour set
tree
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commitdiff
2014-09-17
gmungoc
JAL-1360 refactored for consistent lighter/darker for
tree
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commitdiff
2014-09-17
gmungoc
JAL-1360 workaround for user defined colours display...
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
tree
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commitdiff
2014-09-12
j.procter@dundee...
formatting and organise imports
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 fix: pass selected region to jalview.io via...
tree
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commitdiff
2014-07-22
j.procter@dundee...
JAL-1333 more superposition debugging and deadlock...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-1333 allow reuse of existing chimera for new or...
tree
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commitdiff
2014-07-18
j.procter@dundee...
ensure the dataset is instantiated before materialising...
tree
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commitdiff
2014-07-08
j.procter@dundee...
JAL-1333 allow reuse of existing viewers (of a specifie...
tree
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commitdiff
2014-07-04
j.procter@dundee...
JAL-1333 more abstraction and refactoring and working...
tree
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commitdiff
2014-07-03
j.procter@dundee...
Merge branch 'Release_2_8_2_Branch' into features/JAL...
tree
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commitdiff
2014-07-03
j.procter@dundee...
Merge branch 'hotfix/JAL-1530' into develop
tree
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commitdiff
2014-07-03
j.procter@dundee...
Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch
tree
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commitdiff
2014-07-03
Jim Procter
fixes JAL-1530
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff
2014-06-23
Jim Procter
JAL-1526 simple function to write a snapshot of the...
tree
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commitdiff
2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into develop
tree
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commitdiff
2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch
tree
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commitdiff
2014-06-12
Jim Procter
JAL-1524 fix
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1519 make the splash screen larger/more readable
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1519 fix author update issue (doh)
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-06-03
Jim Procter
JAL-690 jvp rather than jar for save/restore state...
tree
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commitdiff
2014-06-03
Jim Procter
JAL-1473 exclude score models not compatible with PCA...
tree
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commitdiff
2014-05-23
Jim Procter
JAL-1445 extend functionality to select or toggle selec...
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-12
Jim Procter
Merge branch 'JAL-1397' into develop
tree
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commitdiff
2014-05-12
Jim Procter
JAL-1397 catch other random version strings
tree
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commitdiff
2014-05-12
Jim Procter
patch for regression introduced JAL-1397
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'JAL-1397' into develop
tree
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commitdiff
2014-05-02
Jim Procter
JAL-1397 JAL-1066 JAL-1233 refactored annotation colour...
tree
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commitdiff
2014-05-02
Jim Procter
JAL-1369 JAL-1397 version check to support correct...
tree
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commitdiff
2014-05-02
Jim Procter
formatting
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1497 check to see if tree structure is ready for...
tree
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1494 tweaked logic to fix NPEs and modify...
tree
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commitdiff
2014-04-29
Jim Procter
Merge branch 'JAL-1340_redundancy' into develop
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 mark redundant sequences as soon as redundancy...
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 simpler and more efficient interactive highlig...
tree
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commitdiff
2014-04-27
Jim Procter
Merge branch 'JAL-1322' into develop
tree
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commitdiff
2014-04-27
Jim Procter
JAL-1322 avoid rounding error causing non functional...
tree
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commitdiff
2014-04-27
Jim Procter
JAL-1322 allow slider to reach maximum value for parameter
tree
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commitdiff
2014-04-27
Jim Procter
JAL-1322 only update slider when return is pressed
tree
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commitdiff
2014-04-25
Jim Procter
Merge branch 'JAL-1177_prop_rnasecstr' into develop
tree
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commitdiff
2014-04-25
Jim Procter
JAL-1177 additional saveState calls to write a dataset...
tree
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commitdiff
2014-04-25
Jim Procter
JAL-1177 patches to loader to cope with dataset only...
tree
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commitdiff
2014-04-25
Jim Procter
JAL-1177 new flag to write a dataset only jalview XML...
tree
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commitdiff
2014-04-24
Jim Procter
JAL-1232 fix - ensure display all columns flag is set...
tree
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commitdiff
2014-04-23
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1383 scrubbed envision GUI and documentation
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1473 define defaults for DNA/Protein PCA calculation
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1485 JAL-1483 show i18n key for different available...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1485 JAL-1473 use compound i18n messages to constru...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-741 (poss related JAL-971) - fix NPE raised when...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1476 JAL-1016 avoid NPE messiness if structures...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1477 first implementation of 'View all representati...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1466 flag and jalview_properties setting to control...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1466 new calculation menu option to recover the...
tree
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commitdiff
2014-04-21
Jim Procter
tidy imports
tree
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commitdiff
2014-04-21
Jim Procter
patch v2 for JAL-1474 add the newly recovered dataset...
tree
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commitdiff
2014-04-21
Jim Procter
patch v1 for JAL-1474 - make sure we actually set the...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1474 note about buggy 'merge sequence' operation...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1473 tree calcs performed with ScoreModelI instances
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1473 menu entries for different score models availa...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1473 show available score matrices for use in PCA...
tree
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commitdiff
2014-04-05
Jim Procter
Merge branch 'r281_JAL-1211' into develop
tree
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commitdiff
2014-04-05
Jim Procter
Merge branch 'r281_JAL-1211' into Release_2_8_1_Branch
tree
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commitdiff
2014-04-04
Jim Procter
JAL-1211 - set annotation panel height according to...
tree
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commitdiff
2014-04-04
Jim Procter
fix for JAL-1461 - check that filetype setting in brows...
tree
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commitdiff
2014-03-20
jprocter
Merge branch 'JAL-1459_dnd' into develop
tree
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commitdiff
2014-03-20
jprocter
JAL-1459 ensure we notify the drop handler that we...
tree
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commitdiff
2014-02-26
Jim Procter
Merge branch 'JAL-1226' into develop
tree
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commitdiff
2014-02-26
Jim Procter
fix for JAL-1226
tree
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commitdiff
2014-02-21
Jim Procter
Merge branch 'pathc_JAL-1354' into develop
tree
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commitdiff
2014-02-21
Jim Procter
JAL-1448 reinstate non-locale sensitive code for readin...
tree
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commitdiff
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