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JAL-2110 bug fixing and tidying for get cross-refs
[jalview.git] / src / jalview / gui /
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy tree | commitdiff
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no... tree | commitdiff
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue... tree | commitdiff
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence tree | commitdiff
2016-04-27 tcofoegbure-enabled new uniprot sequence fetcher on spike branch tree | commitdiff
2016-04-26 tcofoegbumerge tree | commitdiff
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable... tree | commitdiff
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right... tree | commitdiff
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling... tree | commitdiff
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 gmungocJAL-1812 JAL-2068 only allow one Groovy console open... tree | commitdiff
2016-04-24 Jim ProcterJAL-1551 JAL-2077 formatting tree | commitdiff
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 make GroovyConsole a singleton so tests requir... tree | commitdiff
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house... tree | commitdiff
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame... tree | commitdiff
2016-04-20 Jim Procterfix for JAL-2072 tree | commitdiff
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... tree | commitdiff
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... tree | commitdiff
2016-04-14 gmungocJAL-1421 type parameter added to some collections tree | commitdiff
2016-04-12 gmungocJAL-2050 only hide introns if exons are present! Remove... tree | commitdiff
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time tree | commitdiff
2016-04-11 tcofoegbumerge tree | commitdiff
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... tree | commitdiff
2016-04-11 gmungocJAL-1705 (new preference option to) hide introns when... tree | commitdiff
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop tree | commitdiff
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display tree | commitdiff
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo... tree | commitdiff
2016-04-06 tcofoegbumerge tree | commitdiff
2016-04-06 tcofoegbuJAL-1960 updated test to capture new behaviour improvement tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API tree | commitdiff
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... tree | commitdiff
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... tree | commitdiff
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... tree | commitdiff
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality... tree | commitdiff
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check... tree | commitdiff
2016-03-28 tcofoegbumerge tree | commitdiff
2016-03-28 tcofoegbuJAL-1668 removed redundant UI elements in PopupMenu... tree | commitdiff
2016-03-28 gmungocJAL-2016 push getFeatureColourScheme(source) into Seque... tree | commitdiff
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher... tree | commitdiff
2016-03-24 gmungocJAL-1705 removed experimental 'highlight selection... tree | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-22 tcofoegburesolve conflict with Mungo's merge tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-22 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... tree | commitdiff
2016-03-22 gmungocJAL-1705 add xref seqs to 'parent' dataset only if... tree | commitdiff
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support tree | commitdiff
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop tree | commitdiff
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI tree | commitdiff
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter tree | commitdiff
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-10 tcofoegbudevelop merge tree | commitdiff
2016-03-10 tcofoegbuJAL-2025 added code to stanitise query for structure... tree | commitdiff
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual... tree | commitdiff
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according... tree | commitdiff
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage... tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-19 gmungocJAL-1705 refactor show products, set initial split... tree | commitdiff
2016-02-19 gmungocJAL-1705 more lenient test for 'sequence retrieved' tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-12 gmungocJAL-282 wrap very long id in tooltip tree | commitdiff
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'... tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-02-12 gmungocMerge branch 'develop' into tree | commitdiff
2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and... tree | commitdiff
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more... tree | commitdiff
2016-02-05 gmungocJAL-2006 scale even very small score ranges to a usable... tree | commitdiff
2016-02-04 gmungocJAL-2003 export features on alignment, not alignment... tree | commitdiff
2016-01-29 gmungocJAL-1705 copy feature settings when opening a split... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-25 gmungocJAL-1997 database browser support tooltip if available tree | commitdiff
2016-01-23 gmungocJAL-1355 get dialog title from message bundle tree | commitdiff
2016-01-23 gmungocJAL-1705 copy 'show sequence features' setting in ... tree | commitdiff
2016-01-21 gmungocJAL-1705 AlignmentUtils method renamed tree | commitdiff
2016-01-11 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns... tree | commitdiff
2016-01-11 tcofoegbuJAL-1990 added a progress indicator for Structure Choos... tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... tree | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... tree | commitdiff
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list... tree | commitdiff
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' tree | commitdiff
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in... tree | commitdiff
2015-11-30 gmungocJAL-1980 check for null alignment; JAL-1551 @Override... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
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