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JAL-1641 added support for persisting and retrieveing SequenceGroup
[jalview.git]
/
src
/
jalview
/
gui
/
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 bug fix for 'no sort' case + tests for autocal...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
tree
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commitdiff
2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 prototype of new Annotations menu with sort...
tree
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commitdiff
2014-10-30
Charles Ofoegbu
JAL-1541 BioJs MSA Viewer export option implementation
tree
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commitdiff
2014-10-28
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2014-10-28
gmungoc
JAL-1264 refactor to add menu options to _both_ sequenc...
tree
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commitdiff
2014-10-28
Charles Ofoegbu
2_8_2_Branch merge
tree
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commitdiff
2014-10-28
Charles Ofoegbu
JAL-1250 Redundancy removal bug fix for Applet version
tree
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commitdiff
2014-10-27
Jim Procter
Merge branch 'Release_2_8_2_Branch' into merge_r282_dev
tree
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commitdiff
2014-10-27
Charles Ofoegbu
Updated RedundancyPanel.java to referesh the tree view...
tree
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commitdiff
2014-10-27
Charles Ofoegbu
Patch for redundancy removal
tree
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commitdiff
2014-10-23
Jim Procter
patch fixes JAL-1558
tree
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commitdiff
2014-10-23
gmungoc
JAL-1264 further refactoring and tests
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 reinstate missing import
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 initial implementation - only need to extract...
tree
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commitdiff
2014-10-16
Jim Procter
Merge branch 'feature/JAL-674_dssp' into features/JAL...
features/JAL-1264_showHideAnnotations
tree
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commitdiff
2014-10-10
gmungoc
JAL-1481 wrap tooltip in html
tree
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commitdiff
2014-10-10
darolmar
JAL-1420
tree
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commitdiff
2014-10-10
darolmar
JAL-1355
tree
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commitdiff
2014-10-09
Jim Procter
patch fixes JAL-1558
tree
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commitdiff
2014-10-08
gmungoc
Merge branch 'Release_2_8_2_Branch' into
tree
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commitdiff
2014-10-07
Jim Procter
JAL-1557 partial implementation - need to think about...
tree
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commitdiff
2014-10-07
Jim Procter
patch for JAL-1151 - select whole sequence when double...
tree
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commitdiff
2014-10-07
Jim Procter
JAL-1421 remove Vector and pass a list
tree
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commitdiff
2014-10-07
gmungoc
JAL-1264 wip
tree
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commitdiff
2014-10-07
gmungoc
JAL-1554 handle left-then-right click on sequence id
tree
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commitdiff
2014-10-03
Jim Procter
JAL-1355 removed all top level html tags from message...
tree
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commitdiff
2014-10-03
gmungoc
JAL-1264 javadoc update
tree
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commitdiff
2014-10-03
gmungoc
JAL-1506 delete all warning; JAL-1264 show/hide annotations
tree
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commitdiff
2014-10-03
gmungoc
JAL-1264 refactored show/hide annotation types includin...
tree
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commitdiff
2014-10-03
gmungoc
JAL-1481 search expression validation
tree
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commitdiff
2014-10-03
gmungoc
JAL-914 don't open help window twice
tree
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commitdiff
2014-10-03
Jim Procter
Merge branch 'Release_2_8_2_Branch' into Release_2_8_2_...
tree
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commitdiff
2014-09-26
darolmar
JAL-1355
tree
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commitdiff
2014-09-25
gmungoc
JAL-1264 tidy up use of MouseListener for showHideAnnot...
tree
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commitdiff
2014-09-25
gmungoc
JAL-1264 alternative (popup menu) way to show/hide...
tree
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commitdiff
2014-09-24
gmungoc
JAL-1264 further refactoring of panel + unit tests
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
2014-09-18
gmungoc
Merge branch 'JAL-1360_Branch' into Release_2_8_2_Branch
tree
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commitdiff
2014-09-18
gmungoc
JAL-1360 Javadoc, Vector replaced with ArrayList, code...
tree
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commitdiff
2014-09-18
gmungoc
JAL-1360 refactored utility method to ColorUtils class
tree
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commitdiff
2014-09-17
gmungoc
Correct colour for text when colour set
tree
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commitdiff
2014-09-17
gmungoc
JAL-1360 refactored for consistent lighter/darker for
tree
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commitdiff
2014-09-17
gmungoc
JAL-1360 workaround for user defined colours display...
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
tree
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commitdiff
2014-09-12
j.procter@dundee...
formatting and organise imports
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 fix: pass selected region to jalview.io via...
tree
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commitdiff
2014-08-08
j.procter@dundee...
formatting/typo
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 model and api for feature display list on...
tree
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commitdiff
2014-07-22
j.procter@dundee...
JAL-1333 more superposition debugging and deadlock...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-1333 allow reuse of existing chimera for new or...
tree
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commitdiff
2014-07-18
j.procter@dundee...
ensure the dataset is instantiated before materialising...
tree
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commitdiff
2014-07-08
j.procter@dundee...
JAL-1333 allow reuse of existing viewers (of a specifie...
tree
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commitdiff
2014-07-04
j.procter@dundee...
JAL-1333 more abstraction and refactoring and working...
tree
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commitdiff
2014-07-03
j.procter@dundee...
Merge branch 'Release_2_8_2_Branch' into features/JAL...
tree
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commitdiff
2014-07-03
j.procter@dundee...
Merge branch 'hotfix/JAL-1530' into develop
tree
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commitdiff
2014-07-03
j.procter@dundee...
Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch
tree
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commitdiff
2014-07-03
Jim Procter
fixes JAL-1530
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff
2014-06-23
Jim Procter
JAL-1526 simple function to write a snapshot of the...
tree
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commitdiff
2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
tree
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commitdiff
2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into develop
tree
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commitdiff
2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch
tree
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commitdiff
2014-06-12
Jim Procter
JAL-1524 fix
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1519 make the splash screen larger/more readable
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1519 fix author update issue (doh)
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-06-03
Jim Procter
JAL-690 jvp rather than jar for save/restore state...
tree
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commitdiff
2014-06-03
Jim Procter
JAL-1473 exclude score models not compatible with PCA...
tree
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commitdiff
2014-05-23
Jim Procter
JAL-1445 extend functionality to select or toggle selec...
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-12
Jim Procter
Merge branch 'JAL-1397' into JAL-1372_referenceseq
tree
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commitdiff
2014-05-12
Jim Procter
Merge branch 'JAL-1397' into develop
tree
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commitdiff
2014-05-12
Jim Procter
JAL-1397 catch other random version strings
tree
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commitdiff
2014-05-12
Jim Procter
patch for regression introduced JAL-1397
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'JAL-1397' into develop
tree
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commitdiff
2014-05-02
Jim Procter
JAL-1397 JAL-1066 JAL-1233 refactored annotation colour...
tree
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commitdiff
2014-05-02
Jim Procter
JAL-1369 JAL-1397 version check to support correct...
tree
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commitdiff
2014-05-02
Jim Procter
formatting
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1497 check to see if tree structure is ready for...
tree
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1494 tweaked logic to fix NPEs and modify...
tree
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commitdiff
2014-04-29
Jim Procter
Merge branch 'JAL-1340_redundancy' into develop
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 mark redundant sequences as soon as redundancy...
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 simpler and more efficient interactive highlig...
tree
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commitdiff
2014-04-27
Jim Procter
Merge branch 'JAL-1322' into develop
tree
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commitdiff
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