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JAL-2574 renamed findFeatures as findOverlappingFeatures to minimise
[jalview.git]
/
src
/
jalview
/
gui
/
2017-06-30
gmungoc
JAL-2574 renamed findFeatures as findOverlappingFeature...
bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into bug/JAL-2541cutWithFeatures
tree
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commitdiff
2017-06-28
gmungoc
Merge branch 'bug/JAL-2600resizeflicker' into develop
tree
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commitdiff
2017-06-28
kiramt
JAL-2600 Tidies
bug/JAL-2600resizeflicker
tree
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commitdiff
2017-06-28
kiramt
JAL-2600 updates following review
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 Tidies
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 Abandoned fastpaint for resize; now full repai...
tree
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commitdiff
2017-06-27
gmungoc
JAL-2602 check for null or empty description when copyi...
tree
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commitdiff
2017-06-27
gmungoc
JAL-1858 highlights on wrapped panel - work in progress
tree
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commitdiff
2017-06-27
gmungoc
JAL-147 scroll wrapped panel by one width's worth at...
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 Add in IdCanvas and checks for 0 size images
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 vertical fast paint too
tree
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commitdiff
2017-06-27
kiramt
JAL-2600 fast painting on resize
tree
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commitdiff
2017-06-26
kiramt
JAL-2600 reinstate original behaviour
tree
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commitdiff
2017-06-26
gmungoc
JAL-1858 ensure full redraw on 'remove all selections'
tree
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commitdiff
2017-06-24
gmungoc
JAL-1858 null img when doing full repaint of wrapped...
tree
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commitdiff
2017-06-24
gmungoc
JAL-1858 don't fastpaint highlights if wrapped format
bug/JAL-1858fastPaintHighlights
tree
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commitdiff
2017-06-24
gmungoc
JAL-1858 refactored method to redraw previous/new highl...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 handle hidden columns when computing region...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 'fastPaint' of minimal region for highlights...
tree
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commitdiff
2017-06-21
gmungoc
JAL-2524 don't render up to a hidden marker beyond...
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
bug/JAL-2591
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2589gapColour' into develop
tree
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
tree
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commitdiff
2017-06-13
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-12
gmungoc
JAL-2577 mirror select/hide by annotation in split...
tree
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commitdiff
2017-06-12
gmungoc
JAL-2577 mirror hide/select columns by annotation acros...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2594 avoid stack trace creating feature on gapped...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 setStatusMessage avoid redundant findPosition...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
tree
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commitdiff
2017-06-07
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More rationalising of hiddencols
tree
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commitdiff
2017-06-07
gmungoc
JAL-2386 ensure group conservation shading is applied...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Increased granularity of overview panel update...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 simplifying hidden columns usage
tree
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commitdiff
2017-06-06
kiramt
JAL-2591 Removed getHiddenRegions()==null checks which...
tree
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commitdiff
2017-06-05
Jim Procter
JAL-2590 patch for rendering eggnog trees with polytomi...
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 only hide/show columns intersecting with curre...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 use HiddenColumns.hideMarkedBits and take...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 ‘Hide Insertions’ now operates on selection...
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'bug/JAL-2578' into develop
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-02
tcofoegbu
JAL-2473 revised default minimum dimension for Alignmen...
tree
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commitdiff
2017-06-02
kiramt
JAL-2578 Moved hidden columns reveal to before selectio...
bug/JAL-2578
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
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commitdiff
2017-06-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-06-01
Jim Procter
Merge branch 'features/JAL-1648_cache_user_inputs'...
tree
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commitdiff
2017-05-31
Jim Procter
Merge branch 'JAL-2571' into develop
tree
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commitdiff
2017-05-31
gmungoc
JAL-2574 preparation for Sequence.findFeatures(col1...
tree
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commitdiff
2017-05-31
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-31
gmungoc
JAL-2547 handle contact features 'around' a gap correctly
tree
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commitdiff
2017-05-30
kiramt
JAL-2573 Fixes for alignment < viewport width, and...
JAL-2571
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-30
gmungoc
JAL-2547 tooltip/AmendFeatures on gap straddled by...
tree
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commitdiff
2017-05-30
kiramt
JAL-2571 Corrected alignment width/height checks to...
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2034contextchange' into develop
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-29
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
tree
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commitdiff
2017-05-29
Jim Procter
JAL-2536 tweak javadoc wording
tree
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commitdiff
2017-05-29
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-27
Jim Procter
Merge branch 'bug/JAL-2491' into develop
tree
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commitdiff
2017-05-27
Jim Procter
Merge branch 'bug/JAL-2547tooltipOnGap' into develop
tree
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commitdiff
2017-05-27
Jim Procter
JAL-2526 test and documentation for SeqPanel.setStatus...
tree
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commitdiff
2017-05-26
tcofoegbu
Merge branch 'features/JAL-1648_cache_user_inputs'...
tree
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commitdiff
2017-05-26
tcofoegbu
JAL-1648 fix to transfer focus back to alignment frame...
tree
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commitdiff
2017-05-26
gmungoc
JAL-2290 no update if no change of residue JAL-2547...
tree
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
tree
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commitdiff
2017-05-25
Jim Procter
Merge branch 'develop' into features/JAL-1648_cache_use...
tree
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commitdiff
2017-05-25
kiramt
JAL-2034 don't update overview after click without...
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-24
kiramt
JAL-2551 Fix to group colouring when group extent is...
bug/JAL-2551
tree
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commitdiff
2017-05-23
gmungoc
JAL-2490 find features for export as GFF, JAL-2548...
tree
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commitdiff
2017-05-23
gmungoc
JAL-2547 don't show features in tooltip over a gap
bug/JAL-2547tooltipOnGap
tree
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commitdiff
2017-05-23
gmungoc
JAL-2490 tidy code and tests for feature export in...
tree
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commitdiff
2017-05-22
gmungoc
JAL-2505 updates after conflicting merge of JAL-2504
tree
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commitdiff
2017-05-22
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-22
gmungoc
JAL-2504 update the right feature colour when creating...
bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-22
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-19
gmungoc
JAL-2526 removed redundant call to Sequence.findPosition()
tree
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commitdiff
2017-05-18
gmungoc
JAL-2490 lookup sequence features for "labelClass"
tree
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commitdiff
2017-05-18
gmungoc
JAL-2490 lookup features at each column position
tree
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commitdiff
2017-05-18
gmungoc
JAL-2543 html-encode quote characters in feature descri...
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'bug/JAL-2510amendFeatures' into develop
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
tree
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commitdiff
2017-05-17
gmungoc
JAL-2504 use (and update) defaults for new feature...
tree
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commitdiff
2017-05-17
gmungoc
Merge branch 'develop' into bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-16
kiramt
JAL-2536 Overview window sizing not subject to min...
bug/JAL-2536
tree
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commitdiff
2017-05-16
kiramt
Merge branch 'develop' into bug/JAL-2491
tree
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commitdiff
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