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format adapter should return AlignmentI
[jalview.git]
/
src
/
jalview
/
gui
/
2012-11-17
jprocter
openjdk7 returns null for default value selected format...
tree
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-11-09
jprocter
constructor takes settings from any existing feature...
tree
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commitdiff
2012-11-08
jprocter
JAL-1193 ensure the 'loadedComplete' method gets called...
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commitdiff
2012-11-08
jprocter
tidy imports
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commitdiff
2012-10-24
jprocter
JAL-1193 call setLoadingFromArchiveFinished(true) for...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-04
jprocter
Merge branch 'develop' into Release_2_8_Branch
tree
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commitdiff
2012-10-04
jprocter
JAL-1064 JAL-671 make sure all buttons are disabled...
tree
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-10-03
jprocter
JAL-1183 JAL-343 - use dialog queue for JABA warning...
tree
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commitdiff
2012-10-02
jprocter
JAL-1185 patch NPE - create new group for subtree on...
tree
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1137 messy hardcoding of author list to...
tree
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1139 hardcode preferred height to logo...
tree
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commitdiff
2012-10-01
jprocter
JAL-1130 more robust loading code and different logos...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog thread is only started after the splash...
tree
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commitdiff
2012-10-01
jprocter
JAL-1111 dialog flickers whilst example file starts...
tree
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commitdiff
2012-10-01
jprocter
JAL-1184 apparent deadlock when launching jalview on...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog queue
tree
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commitdiff
2012-09-27
jprocter
JAL-1030 patch typo
tree
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commitdiff
2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
tree
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commitdiff
2012-09-25
jprocter
JAL-1010 write validated value back to text field to...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 - trap redraw buffer OOM errors. needs a test...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 try to catch OOMs when loading annotation...
tree
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commitdiff
2012-09-24
jprocter
formatting
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commitdiff
2012-09-24
jprocter
JAL-958 enable logo display when normalise option selected
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commitdiff
2012-09-24
jprocter
only recalc group conservation after last sequence...
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
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commitdiff
2012-09-21
jprocter
JAL-1165 allow progress indicators on the web service...
tree
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commitdiff
2012-09-21
jprocter
JAL-1130 jalview spinning icon for web service dialog
tree
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commitdiff
2012-09-21
jprocter
JAL-1130 splashscreen logo
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo in help, splash screen and web servic...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo spinner in webservices status window
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 made SplashScreen able to be a dialog that...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 refactored standard hyperlink handler code...
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commitdiff
2012-09-19
jprocter
JAL-1130 trial view of new logo on splashscreen.
tree
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commitdiff
2012-09-06
jprocter
JAL-958 flag indicating if visualization settings for...
tree
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commitdiff
2012-09-06
jprocter
JAL-958 store/recover normalised flag
tree
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commitdiff
2012-09-05
jprocter
JAL-1136 give pre-existing custom settings a special...
tree
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commitdiff
2012-09-05
jprocter
JAL-1111 allow news reader window to be moved even...
tree
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commitdiff
2012-09-05
jprocter
JAL-976 fix AACon name typo in source and GUI
tree
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commitdiff
2012-09-03
jprocter
JAL-591 adapt option layout to width of dialog box
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commitdiff
2012-09-03
jprocter
JAL-1111 news reader shouldn't be modal.
tree
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commitdiff
2012-09-03
jprocter
JAL-1111 doh - helps if you pass modality flag onto...
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commitdiff
2012-09-02
jprocter
JAL-812 only trigger alignment redraw and calculation...
tree
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commitdiff
2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
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commitdiff
2012-09-02
jprocter
JAL-1158 - request focus after opening window.
tree
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commitdiff
2012-09-02
jprocter
JAL-1062 use matching region or first section of sequen...
tree
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commitdiff
2012-09-01
jprocter
JAL-1075 sort nodes alphabetically
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commitdiff
2012-09-01
jprocter
JAL-1160 support horizontal mouse wheel scrolling events
tree
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commitdiff
2012-09-01
jprocter
JAL-1161 JAL-1160 implement custom mousewheel listener...
tree
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commitdiff
2012-09-01
jprocter
javadoc
tree
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commitdiff
2012-08-31
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 new menu items in desktop popup menu for creat...
tree
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commitdiff
2012-08-31
jprocter
JAL-1157 new window for displaying HTML formatted text...
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 refactor tooltip html generation code to jalvi...
tree
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commitdiff
2012-08-29
jprocter
JAL-1155 fix panel length calculation for grouped graph...
tree
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commitdiff
2012-08-29
jprocter
JAL-1066 limit available rows to per-sequence when...
tree
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commitdiff
2012-08-29
jprocter
formatting
tree
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commitdiff
2012-08-29
jprocter
JAL-1153 JAL-1155 improved layout and allowed labels...
tree
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commitdiff
2012-08-29
jprocter
JAL-1153 new runtime property set to first non-null...
tree
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commitdiff
2012-08-29
jprocter
JAL-48 patch NPE when encountering an alignment window...
tree
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commitdiff
2012-08-28
jprocter
JAL-1066 basic gui and functionality for per-sequence...
tree
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commitdiff
2012-08-28
jprocter
formatting
tree
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commitdiff
2012-08-28
jprocter
JAL-1145 patch: sequence associated annotation with...
tree
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commitdiff
2012-08-28
jprocter
JAL-1136 sometimes there are no parameters associated...
tree
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commitdiff
2012-08-28
jprocter
JAL-1148 reinstate sequence references for annotation...
tree
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commitdiff
2012-08-24
jprocter
JAL-879 adding to _rnaList will trigger another onUINew...
tree
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commitdiff
2012-08-24
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-24
jprocter
JAL-1143 - ensure we revalidate annotation panel height...
tree
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commitdiff
2012-08-17
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-14
Anne Menard
last version stay many bugs ..
tree
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commitdiff
2012-08-07
jprocter
Debug message associated with TODO for JAL-1136 - re...
tree
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commitdiff
2012-08-07
jprocter
JAL-975 JAL-1137 debug messages for web service client...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 Ensure asynchronously calculated autoannotatio...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 JAL-811 JAL-812 store/recover autocalc alignme...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 fix logic for recovering AACons params
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 store ws-parameter list as XML element content...
tree
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commitdiff
2012-08-03
jprocter
JAL-1115 reference to List<SequenceI> passed in 'alignm...
tree
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commitdiff
2012-08-01
jprocter
JAL-976 ensure protein disorder services appears in...
tree
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commitdiff
2012-07-16
Anne Menard
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2012-07-10
Anne Menard
v2
tree
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commitdiff
2012-07-08
jprocter
a209409239 (JAL-976 - add support for storing service...
tree
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commitdiff
2012-07-08
jprocter
JAL-976 - storing service parameters on the view model
tree
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commitdiff
2012-07-06
jprocter
JAL-976 test if the sliders have been modified from...
tree
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commitdiff
2012-07-06
jprocter
tidy imports
tree
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commitdiff
2012-07-05
Anne Menard
Add support RNAML format
tree
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commitdiff
2012-07-03
jprocter
JAL-974 - broken copy of feature settings
tree
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commitdiff
2012-07-02
jprocter
JAL-1129 progress bar - this patch doesn't provide...
tree
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commitdiff
2012-07-02
jprocter
JAL-968 incremental - PNG/EPS output has annotation...
tree
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commitdiff
2012-07-02
jprocter
tidy imports
tree
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commitdiff
2012-07-02
jprocter
JAL-974 - use refactored methods on AlignmentPanel
tree
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commitdiff
2012-07-02
jprocter
JAL-974 - refactor FeatureRenderer constructor to Align...
tree
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commitdiff
2012-07-01
jprocter
JAL-1117 alleviate lock starvation
tree
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commitdiff
2012-07-01
jprocter
ensure all annotation dependent rendering gets refreshed
tree
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commitdiff
2012-06-19
jprocter
JAL-975 - bespoke AACons settings object to save curren...
tree
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commitdiff
2012-06-19
jprocter
patch for JAL-1172 ensure option's default value is...
tree
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commitdiff
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