JAL-1632 add score model params to PCAModel and PCA constructors
[jalview.git] / src / jalview / gui /
2017-02-27 gmungocJAL-1632 add score model params to PCAModel and PCA...
2017-02-27 gmungocJAL-1632 refactored NJTree constructor to include Simil...
2017-02-27 gmungocJAL-2403 JAL-838 remove unused methods and unneeded...
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-17 gmungocJAL-2423 refactored method to build panel title for...
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV"
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to...
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop...
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as...
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode...
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with...
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is...
2017-02-08 gmungocJAL-2405 set context on selection group for tailored...
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme...
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2385 update slider settings when switching slider...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2383 check for null, spelling
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi...
2017-01-20 gmungocJAL-2383 restore group conservation slider setting...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into...
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-12 gmungocJAL-2379 null references to PCA model when panel is...
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead...
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in...
2017-01-05 gmungocJAL-2371 tests added
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight...
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes
2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-21 gmungocJAL-2360 set new/loaded colour scheme name correctly
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
2016-12-21 gmungocJAL-2360 fix incorrect action on Cancel user defined...
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name...
2016-12-16 kiramtJAL-2316 Added database name column to URL links table...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-15 kiramtJAL-2316 Changes following review.
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee...
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-12-12 gmungocJAL-1544 backgroud -> background
2016-12-12 kiramtJAL-2316 Added GUI checks for duplicate link ids
2016-12-12 kiramtJAL-2316 Unit test update to UrlLinkTableModel and...
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option
2016-12-08 gmungocJAL-2359 add Window menu entry only after all danger...
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-12-05 kiramtJAL-2316 Added UrlProvider factories. Tidied up labelling.
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
2016-12-02 kiramtJAL-2316 GUI updates to Connections tab in Preferences...
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction...
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFurther tweaks to get tests passing
2016-11-24 tcofoegbuJAL-2326 added layer of abstraction between Jalview...
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