JAL-2506 allow graduated colour as default in new Sequence Feature
[jalview.git] / src / jalview / gui /
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque...
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat...
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value...
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox
2017-05-03 Jim ProcterJAL-2432 simplify code
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection...
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons...
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for...
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout
2017-05-02 gmungocJAL-2499 inlined two 1-line methods
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped...
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row...
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree...
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
2017-04-11 tcofoegbuPull from develop features/JAL-2473_set-minimium-dimensions
2017-04-11 tcofoegbuJAL-2473 removed unused fields in JalviewDialog
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher...
2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-10 tcofoegbuJAL-2473 added improvement to apply default / custom...
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour...
2017-04-07 gmungocJAL-2393 code tidying for review comments
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check...
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour...
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
2017-03-30 gmungocJAL-2401 code and help tidy for review comments
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups
2017-03-27 gmungocJAL-2416 tooltip with descriptions for score models...
2017-03-27 gmungocJAL-2416 add score model description field for tooltip...
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin...
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML...
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text...
2017-03-24 gmungocJAL-1632 named parameters
2017-03-24 kiramtJAL-2314 Tidy up
2017-03-24 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca...
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues
2017-03-23 gmungocJAL-1632 suppress PID parameter options in Tree/PCA...
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 kiramtJAL-2314 Tidies
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota...
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence...
2017-03-21 gmungocJAL-2243 update discovered features on opening structur...
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into...
2017-03-20 kiramtJAL-2388 Comment typo
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split...
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui...
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated...
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu...
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp...
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-28 gmungocJAL-1632 disable parameters not applicable for score...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
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