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Merge branch 'features/JAL-2360colourSchemeApplicability' into
[jalview.git] / src / jalview / gui /
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in... tree | commitdiff
2017-01-05 gmungocJAL-2371 tests added tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... tree | commitdiff
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes tree | commitdiff
2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup tree | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... tree | commitdiff
2016-12-21 gmungocJAL-2360 set new/loaded colour scheme name correctly tree | commitdiff
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... tree | commitdiff
2016-12-21 gmungocJAL-2360 fix incorrect action on Cancel user defined... tree | commitdiff
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a... tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee... tree | commitdiff
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu tree | commitdiff
2016-12-12 gmungocJAL-1544 backgroud -> background tree | commitdiff
2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option tree | commitdiff
2016-12-08 gmungocJAL-2359 add Window menu entry only after all danger... tree | commitdiff
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose... tree | commitdiff
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction... tree | commitdiff
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects tree | commitdiff
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane tree | commitdiff
2016-11-24 gmungocFurther tweaks to get tests passing tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added layer of abstraction between Jalview... tree | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop tree | commitdiff
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... tree | commitdiff
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... tree | commitdiff
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... tree | commitdiff
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... tree | commitdiff
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera... tree | commitdiff
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... tree | commitdiff
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... tree | commitdiff
2016-11-04 kiramtJAL-2282 Better check for existing url links tree | commitdiff
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... tree | commitdiff
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... tree | commitdiff
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links tree | commitdiff
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... tree | commitdiff
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code... tree | commitdiff
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener... tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... tree | commitdiff
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink tree | commitdiff
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code tree | commitdiff
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... tree | commitdiff
2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than... tree | commitdiff
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR... tree | commitdiff
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... tree | commitdiff
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... tree | commitdiff
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association... tree | commitdiff
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box tree | commitdiff
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog tree | commitdiff
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit tree | commitdiff
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well... tree | commitdiff
2016-10-22 kiramtWorking links menu tree | commitdiff
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file. tree | commitdiff
2016-10-17 kiramtacceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2 tree | commitdiff
2016-10-17 kiramtRe-attempt to fix JAL-1552 by removing extra calls... tree | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties tree | commitdiff
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to... tree | commitdiff
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has... tree | commitdiff
2016-10-13 gmungocJAL-2044 include model name in progress bar message... tree | commitdiff
2016-10-11 tcofoegbuMerge branch 'features/JAL-2039_Offer_cached_structuref... tree | commitdiff
2016-10-11 tcofoegbuJAL-2039 improvement to offer cached structure view... features/JAL-2039_Offer_cached_structurefiles_immediately tree | commitdiff
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-11 gmungocJAL-2241 check for null jprovider when processing New... tree | commitdiff
2016-10-11 kiramtJAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl tree | commitdiff
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
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