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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
io
/ AppletFormatAdapter.java
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2014-01-27
Jim Procter
JAL-1430 mfa added as a known extension for FASTA files
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2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
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2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
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2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
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2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
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2013-02-05
jprocter
formatting
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2012-12-17
Natasha
test for output a file in Stockholm format
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2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
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2012-11-23
Natasha
stockholm file output code developed by Natasha Sherstneva
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2012-11-17
jprocter
formatting
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2012-11-15
jprocter
allow .rnaml as a filename extension
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2012-11-15
jprocter
Merge branch 'develop' into menard
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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2012-08-14
Anne Menard
last version stay many bugs ..
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2012-07-10
Anne Menard
v2
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2012-07-05
Anne Menard
Add support RNAML format
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-07-25
janengelhardt
some print statements to test things
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2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
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2011-07-25
janengelhardt
Start merging of Laurens Code
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2011-01-07
jprocter
check for all http protocols
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2011-01-05
jprocter
JAL-727
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2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-08-20
jprocter
wrapped code from URL retrieval tester as a function...
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2010-06-11
jprocter
stockholm added as readable format (Lauren Lui commit)
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-03-18
jprocter
disabled simple blast parser for 2.4.1 release
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2010-03-17
jprocter
simple query anchored blast report parser (shh!)
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2010-03-11
jprocter
pass any warning messages to StdErr - also todo to...
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2009-06-08
jprocter
apply gpl development license
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-02-22
jprocter
valid format for writing test
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2008-01-29
jprocter
minor change to output of main method for testing file IO
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2008-01-29
jprocter
add methods to read from current position of existing...
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2008-01-22
jprocter
timings and memory usage for reading in a file
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2008-01-21
jprocter
javadoc and main method for testing file input routines
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2007-10-04
jprocter
refactored list of file extensions and file format...
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2007-07-25
jprocter
IO rearrangement for AMSAFile output
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2007-06-17
jprocter
JnetFIle is a readable format
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2007-04-17
jprocter
javadoc
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2007-02-07
amwaterhouse
Formatting
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2007-01-25
amwaterhouse
Remove unneccessary lines
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2007-01-24
amwaterhouse
output now takes alignment, not just sequences
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2007-01-18
amwaterhouse
File Parsing returns Alignments, not Sequence[]
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2006-08-21
amwaterhouse
header updated
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2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
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2006-08-14
amwaterhouse
Stockholm parser added
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2006-07-25
amwaterhouse
PDB format added
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2006-05-17
jprocter
added unofficial support for concise output parsing...
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2006-03-08
amwaterhouse
Able to read resources from Zip file
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2006-02-08
amwaterhouse
Report invalid chars
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2005-12-06
amwaterhouse
after merge
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