2021-10-06 |
Mateusz Warowny | JAL-3899 Update usages of uniquify and deuniquify. |
tree | commitdiff |
2021-07-22 |
Jim Procter | JAL-3853 patch sequence annotation report code and... |
tree | commitdiff |
2021-07-22 |
Jim Procter | JAL-3848 ensure annotation from a service gets a calcId... |
tree | commitdiff |
2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
tree | commitdiff |
2020-06-30 |
gmungoc | JAL-3446 unused imports removed |
tree | commitdiff |
2020-06-14 |
BobHanson | JAL-3445 BSML BBB file format. |
tree | commitdiff |
2020-06-12 |
BobHanson | JAL-3446 from applet -- reload; also fixes some repaint... |
tree | commitdiff |
2020-06-10 |
BobHanson | JAL-3446 from applet, JAL-3584 tooltip fixes <br> and... |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3664 support for user.home, user.dir, user |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 from JAL-3253 AppletFormatAdapter not fixed |
tree | commitdiff |
2020-06-02 |
BobHanson | this was supposed to go on a separate branch. Didn... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 from JAL-3253-applet StockholmFile updated... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet web page embedding |
tree | commitdiff |
2020-06-01 |
BobHanson | JAL-3626 Regex optimization from JAL-3253-applet; also... |
tree | commitdiff |
2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop |
tree | commitdiff |
2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3407 add GPL license to Jalview source files |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3567virtualFeatureCoordinates... |
tree | commitdiff |
2020-04-21 |
gmungoc | JAL-3603 load annotation file from RELATIVE_URL in... |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-04-14 |
Jim Procter | Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into... |
tree | commitdiff |
2020-04-14 |
gmungoc | JAL-3583 remove debug logging, Javadoc added |
tree | commitdiff |
2020-03-31 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-03-30 |
Jim Procter | JAL-3407 JAL-3130 back out java 9+ syntax that breaks... |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsi... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 small tidy |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 improvement to feature description truncation... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 Obsessively fixed self-closing <br/> tags |
tree | commitdiff |
2020-03-03 |
soares | JAL-3468 Adapted methods to report how many features... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 attempt to guess database for a sequence’s... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3532 TODO comment |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 preferentially output source dbrefs or princip... |
tree | commitdiff |
2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into... |
tree | commitdiff |
2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2019-11-01 |
Ben Soares | JAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files |
tree | commitdiff |
2019-10-31 |
gmungoc | JAL-3468 truncate feature description to 40 chars in... |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-08-13 |
Jim Procter | JAL-3362 keep Java 1.8 build happy by specifying generi... |
tree | commitdiff |
2019-08-13 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-07-10 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-07-10 |
Jim Procter | Merge branch 'merge/JAL-3285_mchmmer_with_211_develop... |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-07-03 |
tva | JAL-2629 removed empty line produced under sequence... |
tree | commitdiff |
2019-07-03 |
tva | JAL-2629 can now filter by sequence e-value or bit... |
tree | commitdiff |
2019-07-02 |
tva | JAL-2629 add simple jackhmmer functionality |
tree | commitdiff |
2019-06-28 |
tva | JAL-2629 add ability to add background frequencies... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3187 javadoc |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features also for... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview... |
tree | commitdiff |
2019-06-13 |
gmungoc | JAL-3143 recognise lnc_RNA as transcript |
tree | commitdiff |
2019-06-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-06-07 |
gmungoc | JAL-2738 use GeneLocus extends DBRefEntry to hold chrom... |
tree | commitdiff |
2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-06-06 |
tva | JAL-3285 fix FileLoader failing to load HMMER file |
tree | commitdiff |
2019-06-05 |
tva | JAL-3285 add methods and small changes to StockholmFile... |
tree | commitdiff |
2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
tree | commitdiff |
2019-05-29 |
gmungoc | JAL-2738 error logging if no ##reference found |
tree | commitdiff |
2019-05-29 |
gmungoc | JAL-2738 accept .csi, default to GRCh37:homo_sapiens... |
tree | commitdiff |
2019-05-27 |
Ben Soares | JAL-3141 Added HashMap types for Java 1.8 compatibility |
tree | commitdiff |
2019-05-25 |
Ben Soares | JAL-3141 One more error log fix |
tree | commitdiff |
2019-05-25 |
Ben Soares | JAL-3141 Added tooltips on Schemes dropdown and Customi... |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Fixes recommended from gmc's test |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Reworked a lot of BackupFiles to allow the... |
tree | commitdiff |
2019-04-29 |
gmungoc | JAL-2738 JAL-2743 update unit test to match new VCF... |
tree | commitdiff |
2019-04-26 |
gmungoc | JAL-2738 JAL-2743 properties to map VCF header to speci... |
tree | commitdiff |
2019-04-18 |
hansonr | explicit Hashtable objects |
tree | commitdiff |
2019-04-17 |
gmungoc | JAL-3026 fix bug loading Jalview Project (in Java) |
tree | commitdiff |
2019-04-04 |
gmungoc | JAL-3220 j2sIgnore on 3 more main methods |
tree | commitdiff |
2019-04-04 |
gmungoc | JAL-3220 j2sIgnore on main methods on test / utility... |
tree | commitdiff |
2019-04-03 |
hansonr | replacing @j2sNative with @j2sIgnore where appropriate... |
tree | commitdiff |
2019-04-03 |
hansonr | j2sNative clean-up. Fixes problem with second try of... |
tree | commitdiff |
2019-03-27 |
hansonr | consolidation of Platform isJS calls |
tree | commitdiff |
2019-03-27 |
hansonr | isJS cleanup |
tree | commitdiff |
2019-03-27 |
hansonr | clean-up of isJS business for (temporarily) noneditable... |
tree | commitdiff |
2019-03-21 |
Ben Soares | JAL-3130 Replaced deprecated Class.newInstance() with... |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
tree | commitdiff |
2019-03-19 |
Ben Soares | JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... |
tree | commitdiff |
2019-03-14 |
gmungoc | JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS |
tree | commitdiff |
2019-03-13 |
gmungoc | JAL-3210 merge conflict tidying |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-03-11 |
gmungoc | Merge branch 'feature/JAL-3127_seqidChainshading' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'bug/JAL-2791exportFilteredFeature' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'feature/JAL-3093wrappedModeTooltips'... |
tree | commitdiff |
next |