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JAL-1544 "more than" not "more that"
[jalview.git]
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src
/
jalview
/
io
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2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
tree
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commitdiff
2015-06-04
tcofoegbu
JAL-1756 bug-fix
tree
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commitdiff
2015-06-04
tcofoegbu
JAL-1641 updated json schema to make it more generic...
tree
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commitdiff
2015-06-02
tcofoegbu
JAL-1641 applet build fix
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1641 remove all refs/imports from gui package
tree
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commitdiff
2015-05-27
tcofoegbu
Merge branch 'features/JAL-1740_Decoup-BioJS' into...
tree
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commitdiff
2015-05-27
tcofoegbu
JAL-1740 updated synch codes to use a git repo rather...
features/JAL-1740_Decoup-BioJS
tree
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commitdiff
2015-05-25
tcofoegbu
build fix
tree
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commitdiff
2015-05-21
tcofoegbu
JAL-1740 implemented auto-update of BioJsMSA, introduce...
features/JAL-1740_BioJsAutoUpdater
tree
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commitdiff
2015-05-20
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
tree
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commitdiff
2015-05-19
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1541 Modified BioJs exporter to take advantage...
tree
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commitdiff
2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
tree
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commitdiff
2015-05-13
tcofoegbu
Fixed some broken tests
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
tree
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commitdiff
2015-05-12
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_1641 added unit test and minor house keeping
tree
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commitdiff
2015-05-11
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
tree
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commitdiff
2015-05-09
unknown
JAL-1601 bugfix on previous commit
tree
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commitdiff
2015-05-09
unknown
JAL-1601 patch burial display for prediction loaded...
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1601 migrated the JABAWS 2.1 jpred burial represent...
tree
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commitdiff
2015-03-27
tcofoegbu
merge commit
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
reassign features already created/documented for 2...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-05
Charles Ofoegbu
merge commit
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 modified jalviewFileChooser to retain default...
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 Modified JalviewFileChooser to have a more...
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1286 don't print an exception if a non-gzip stream...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 tweak signature of core annotation printer...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new entry point for reading annotation files...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 formatting and javadoc
tree
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commitdiff
2015-01-14
gmungoc
JAL-1629 .jar option removed from Alignment File Save...
tree
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2014-12-22
Charles Ofoegbu
Patch to synchronize title svg and allignment svg scrolling
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Charles Ofoegbu
update HtmlSvgOutput to ignore browser invocation when...
tree
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commitdiff
2014-12-15
Charles Ofoegbu
update HtmlSvgOutput to ignore browser invocation when...
features/JAL-1605_html-svg-export
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-08
Charles Ofoegbu
merge commit
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Merge branch 'features/JAL-1605_html-svg-export' into...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 added command line support for html export...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
modified html css
tree
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
tree
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commitdiff
2014-12-01
Jim Procter
JAL-1199 JAL-1569 incremental patch allow non-standard...
tree
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commitdiff
2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into develop
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 make RNAML-extracted secondary structure lines...
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 consistent handling of sequence and alignment...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 preserve input ordering for stockholm files...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-674 add RNA sequence associated annotation to align...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1140 sensible name for seuqences in RNAML files...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
comand line support for svg generation
tree
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commitdiff
2014-11-14
Charles Ofoegbu
House keeping
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Modified biojs exporter/importer to preserve SequenceFe...
tree
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to clean up and close...
tree
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to use class loader while...
tree
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commitdiff
2014-11-06
Charles Ofoegbu
Changes from JAL-1541 patch
tree
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commitdiff
2014-11-06
Charles Ofoegbu
Updated BioJs Html to be capable of launching jalivew
tree
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commitdiff
2014-11-06
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
tree
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commitdiff
2014-10-31
Charles Ofoegbu
JAL-1541 upadated BioJs emmitter to store alignment...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-10-30
Charles Ofoegbu
JAL-1541 BioJs MSA Viewer export option implementation
tree
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commitdiff
2014-10-15
Jim Procter
JAL-674 always try to extract secondary structure when...
tree
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commitdiff
2014-10-15
Jim Procter
JAL-674 make transferAnnotation method static
tree
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commitdiff
2014-10-10
Jim Procter
JAL-674 change jalview.io.AlignFile to allow parsing...
tree
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commitdiff
2014-10-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
tree
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commitdiff
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
tree
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commitdiff
2014-09-26
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1199 add stockholm output to list of AppletFormatAd...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-06-03
Jim Procter
JAL-690 JAL-1503 update file types/extensions in Jalvie...
tree
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commitdiff
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