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remove unnecessary import
[jalview.git]
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src
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jalview
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2006-12-21
amwaterhouse
remove unnecessary import
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commitdiff
2006-12-19
amwaterhouse
description may be null
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commitdiff
2006-12-14
amwaterhouse
set sequence_ref alignment
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commitdiff
2006-12-14
amwaterhouse
Are the labels all secondary Strutures? are the display...
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commitdiff
2006-12-11
jprocter
fixed introduced bug (doh)
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commitdiff
2006-12-11
jprocter
clarified help documentation for annotation file format...
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commitdiff
2006-12-05
amwaterhouse
Sequence is char []
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commitdiff
2006-11-30
amwaterhouse
DasRegistry moved again
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commitdiff
2006-11-28
jprocter
EBI web service interface update (and SequenceFetcher...
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commitdiff
2006-11-21
amwaterhouse
Memory check on loading file
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commitdiff
2006-11-21
amwaterhouse
Set fsettings in constuctor
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commitdiff
2006-11-20
amwaterhouse
Cancel added
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commitdiff
2006-11-14
amwaterhouse
Single seq Blc file detection
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commitdiff
2006-11-13
amwaterhouse
Use j not i
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commitdiff
2006-11-13
amwaterhouse
Fasta files with * read not identified as BLC
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commitdiff
2006-11-13
amwaterhouse
Querystring made from line tokenized seq name, seq...
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commitdiff
2006-11-09
amwaterhouse
alignFrame.setFileName
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commitdiff
2006-11-06
amwaterhouse
Remember fileName in alignFrame
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commitdiff
2006-11-02
amwaterhouse
dasregistry is now dasregistry.org
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commitdiff
2006-10-30
amwaterhouse
Append html
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commitdiff
2006-10-24
amwaterhouse
Only send one call per sequence at the moment
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commitdiff
2006-10-18
amwaterhouse
Wait for response from server before next sequence
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commitdiff
2006-10-18
amwaterhouse
parseDescriptionHTML
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commitdiff
2006-10-10
amwaterhouse
aaIndex replaces aaHash
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commitdiff
2006-10-09
jprocter
imported Vamsas bindings and alpha vamsas client code...
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commitdiff
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
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commitdiff
2006-10-05
amwaterhouse
BatchSize now 10
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commitdiff
2006-10-05
amwaterhouse
OutOfMemoryError test
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commitdiff
2006-10-03
amwaterhouse
Send DAS requests in batches of 20
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commitdiff
2006-10-03
amwaterhouse
DB seqs may be lower or upper case
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commitdiff
2006-08-30
amwaterhouse
jnet file is 1 to 1 mapping
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commitdiff
2006-08-29
amwaterhouse
No stacktrace
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commitdiff
2006-08-29
amwaterhouse
createMapping alreadyMapped
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
amwaterhouse
Remove system.out
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commitdiff
2006-08-18
amwaterhouse
Jalview features format adds links as hrefs
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commitdiff
2006-08-17
amwaterhouse
OptionPane invokeLater
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commitdiff
2006-08-15
amwaterhouse
Acknowledgement
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commitdiff
2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser added
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser
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commitdiff
2006-08-14
amwaterhouse
Do a loop for multiple seq matches
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commitdiff
2006-08-14
amwaterhouse
Correct test string
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commitdiff
2006-08-11
amwaterhouse
Desktop is null if -noDisplay is set
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commitdiff
2006-08-11
amwaterhouse
Make a new FeatureRenderer
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commitdiff
2006-08-10
amwaterhouse
Comment out start and end refs
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commitdiff
2006-07-28
amwaterhouse
output source in gff file
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commitdiff
2006-07-27
amwaterhouse
remove unnecessary constructor
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commitdiff
2006-07-27
amwaterhouse
Use DBRefSource.PDB
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commitdiff
2006-07-26
jprocter
Ignore list created
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commitdiff
2006-07-26
amwaterhouse
back to org.biojava
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commitdiff
2006-07-25
amwaterhouse
jalview.biojava
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commitdiff
2006-07-25
amwaterhouse
PDB format added
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commitdiff
2006-07-21
amwaterhouse
Put DBRefFether in a new thread
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commitdiff
2006-07-21
amwaterhouse
Remove start end for now??
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commitdiff
2006-07-21
amwaterhouse
Add pdb ref
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commitdiff
2006-07-21
amwaterhouse
DBRefs now array
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commitdiff
2006-07-19
amwaterhouse
Make new seq[] when modifying hidden bits
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commitdiff
2006-07-19
amwaterhouse
Count uniprot refs
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commitdiff
2006-07-19
amwaterhouse
Use Selection group to define sequence range to fetch...
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commitdiff
2006-07-18
amwaterhouse
omitHiddenColumns
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commitdiff
2006-07-17
amwaterhouse
Towards an auto dbref fetcher
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commitdiff
2006-07-14
amwaterhouse
Just fetch features for selected seqs
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commitdiff
2006-07-13
amwaterhouse
Selected DAS sources may differ from default
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commitdiff
2006-07-12
amwaterhouse
Append start and end
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commitdiff
2006-07-07
amwaterhouse
Dont discard label if different to H or E
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commitdiff
2006-07-07
amwaterhouse
Make 1.1 compatible
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commitdiff
2006-07-07
amwaterhouse
Move position of stopLoading for 1.5 people
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commitdiff
2006-07-07
amwaterhouse
make 1.1 compatible
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commitdiff
2006-07-07
amwaterhouse
Dont write graph type twice
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commitdiff
2006-07-07
amwaterhouse
Replaced by AnnotationFile
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commitdiff
2006-06-23
amwaterhouse
Uniprot may have several accession ids
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commitdiff
2006-06-23
amwaterhouse
Parse HTML links from jalview features file
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commitdiff
2006-06-22
amwaterhouse
Takes AlignFrame as arg, to update progressbar
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commitdiff
2006-06-22
amwaterhouse
Ye olde SequenceFeatureFetcher
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commitdiff
2006-06-22
amwaterhouse
Renamed to DBRefFetcher
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commitdiff
2006-06-15
amwaterhouse
Use spice-3d das1 source list for nowjalview/gui/DasSou...
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commitdiff
2006-06-15
amwaterhouse
Fixed to trial registry at the moment
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commitdiff
2006-06-15
amwaterhouse
Not using AxisDasRegistry
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commitdiff
2006-06-15
amwaterhouse
Correction - use start and end
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commitdiff
2006-06-15
amwaterhouse
Dont add start and end for the moment
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commitdiff
2006-06-15
amwaterhouse
Wrap alignment moved to alignFrame
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commitdiff
2006-06-14
amwaterhouse
Fileloading progressbar
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commitdiff
2006-06-14
amwaterhouse
Sequence checks for duplicate features
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commitdiff
2006-06-09
amwaterhouse
setAcceptAllFileFilter fixes bug on MacOSX
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commitdiff
2006-06-09
amwaterhouse
Function not used
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commitdiff
2006-06-09
amwaterhouse
Annotation/feature exporter
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commitdiff
2006-06-08
jprocter
Introduced DbRefEntry to DasSourceCoordinateSystem...
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commitdiff
2006-06-07
amwaterhouse
Wrap alignment added to preferences
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commitdiff
2006-06-07
amwaterhouse
NEW FILES
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commitdiff
2006-05-18
jprocter
added future method comment
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commitdiff
2006-05-17
jprocter
added unofficial support for concise output parsing...
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commitdiff
2006-05-17
jprocter
Refactored code for creating annotation objects from...
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commitdiff
2006-05-15
amwaterhouse
All or nothing drawing display char
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commitdiff
2006-05-12
amwaterhouse
pass viewport to fileloader, as we need to fireproperty...
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commitdiff
2006-05-11
amwaterhouse
Slightly smaller recent panel
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commitdiff
2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
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commitdiff
2006-05-10
amwaterhouse
Annotations must createSequenceMapping if seqRef not...
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commitdiff
2006-04-10
amwaterhouse
Fixed protein desc bug
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commitdiff
2006-04-07
amwaterhouse
ModellerOutput set in preferences
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commitdiff
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git://source.jalview.org / jalview.git / history