git://source.jalview.org / jalview.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
removed Iterator usage.
[jalview.git] / src / jalview / io /
2007-03-19 jprocterDAS features mapped to local reference frame tree | commitdiff
2007-03-19 jprocterdisambiguate jalview.datamodel.Mapping from castor... tree | commitdiff
2007-02-27 amwaterhouseUse paintAlignment tree | commitdiff
2007-02-27 amwaterhouseremove p+3 < query.length tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-02-05 amwaterhouseapplet can define groups as parameters tree | commitdiff
2007-02-02 amwaterhouseDont add group if seqs not found tree | commitdiff
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space tree | commitdiff
2007-01-30 amwaterhouseUse util toHexString tree | commitdiff
2007-01-30 amwaterhouseOutput groups in annotation file tree | commitdiff
2007-01-29 amwaterhouseSequenceGroup parsing added to annotation file tree | commitdiff
2007-01-25 amwaterhouseRemove unneccessary lines tree | commitdiff
2007-01-25 amwaterhouseOnly output visible annotations tree | commitdiff
2007-01-25 jprocterreinstating class implementation. tree | commitdiff
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences tree | commitdiff
2007-01-24 amwaterhouseExtension to fastaFile for myhits tree | commitdiff
2007-01-19 amwaterhouseNeed to know protocol to load anntotations tree | commitdiff
2007-01-18 amwaterhouseAdd the last sequence before annotations tree | commitdiff
2007-01-18 amwaterhouse1.1 enabled tree | commitdiff
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[] tree | commitdiff
2007-01-18 amwaterhouseDescriptions can be added to annotations tree | commitdiff
2007-01-04 amwaterhouseReads in anything following seq id as a description tree | commitdiff
2007-01-04 amwaterhouseHEADER and ATOM must be position 0 tree | commitdiff
2006-12-21 jprocterdescription from vamsas sequence and file type change tree | commitdiff
2006-12-21 amwaterhouseremove unnecessary import tree | commitdiff
2006-12-19 amwaterhousedescription may be null tree | commitdiff
2006-12-14 amwaterhouseset sequence_ref alignment tree | commitdiff
2006-12-14 amwaterhouseAre the labels all secondary Strutures? are the display... tree | commitdiff
2006-12-11 jprocterfixed introduced bug (doh) tree | commitdiff
2006-12-11 jprocterclarified help documentation for annotation file format... tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-30 amwaterhouseDasRegistry moved again tree | commitdiff
2006-11-28 jprocterEBI web service interface update (and SequenceFetcher... tree | commitdiff
2006-11-21 amwaterhouseMemory check on loading file tree | commitdiff
2006-11-21 amwaterhouseSet fsettings in constuctor tree | commitdiff
2006-11-20 amwaterhouseCancel added tree | commitdiff
2006-11-14 amwaterhouseSingle seq Blc file detection tree | commitdiff
2006-11-13 amwaterhouseUse j not i tree | commitdiff
2006-11-13 amwaterhouseFasta files with * read not identified as BLC tree | commitdiff
2006-11-13 amwaterhouseQuerystring made from line tokenized seq name, seq... tree | commitdiff
2006-11-09 amwaterhousealignFrame.setFileName tree | commitdiff
2006-11-06 amwaterhouseRemember fileName in alignFrame tree | commitdiff
2006-11-02 amwaterhousedasregistry is now dasregistry.org tree | commitdiff
2006-10-30 amwaterhouseAppend html tree | commitdiff
2006-10-24 amwaterhouseOnly send one call per sequence at the moment tree | commitdiff
2006-10-18 amwaterhouseWait for response from server before next sequence tree | commitdiff
2006-10-18 amwaterhouseparseDescriptionHTML tree | commitdiff
2006-10-10 amwaterhouseaaIndex replaces aaHash tree | commitdiff
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code... tree | commitdiff
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely... tree | commitdiff
2006-10-05 amwaterhouseBatchSize now 10 tree | commitdiff
2006-10-05 amwaterhouseOutOfMemoryError test tree | commitdiff
2006-10-03 amwaterhouseSend DAS requests in batches of 20 tree | commitdiff
2006-10-03 amwaterhouseDB seqs may be lower or upper case tree | commitdiff
2006-08-30 amwaterhousejnet file is 1 to 1 mapping tree | commitdiff
2006-08-29 amwaterhouseNo stacktrace tree | commitdiff
2006-08-29 amwaterhousecreateMapping alreadyMapped tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-08-21 amwaterhouseRemove system.out tree | commitdiff
2006-08-18 amwaterhouseJalview features format adds links as hrefs tree | commitdiff
2006-08-17 amwaterhouseOptionPane invokeLater tree | commitdiff
2006-08-15 amwaterhouseAcknowledgement tree | commitdiff
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string [] tree | commitdiff
2006-08-14 amwaterhouseStockholm parser added tree | commitdiff
2006-08-14 amwaterhouseStockholm parser tree | commitdiff
2006-08-14 amwaterhouseDo a loop for multiple seq matches tree | commitdiff
2006-08-14 amwaterhouseCorrect test string tree | commitdiff
2006-08-11 amwaterhouseDesktop is null if -noDisplay is set tree | commitdiff
2006-08-11 amwaterhouseMake a new FeatureRenderer tree | commitdiff
2006-08-10 amwaterhouseComment out start and end refs tree | commitdiff
2006-07-28 amwaterhouseoutput source in gff file tree | commitdiff
2006-07-27 amwaterhouseremove unnecessary constructor tree | commitdiff
2006-07-27 amwaterhouseUse DBRefSource.PDB tree | commitdiff
2006-07-26 jprocterIgnore list created tree | commitdiff
2006-07-26 amwaterhouseback to org.biojava tree | commitdiff
2006-07-25 amwaterhousejalview.biojava tree | commitdiff
2006-07-25 amwaterhousePDB format added tree | commitdiff
2006-07-21 amwaterhousePut DBRefFether in a new thread tree | commitdiff
2006-07-21 amwaterhouseRemove start end for now?? tree | commitdiff
2006-07-21 amwaterhouseAdd pdb ref tree | commitdiff
2006-07-21 amwaterhouseDBRefs now array tree | commitdiff
2006-07-19 amwaterhouseMake new seq[] when modifying hidden bits tree | commitdiff
2006-07-19 amwaterhouseCount uniprot refs tree | commitdiff
2006-07-19 amwaterhouseUse Selection group to define sequence range to fetch... tree | commitdiff
2006-07-18 amwaterhouseomitHiddenColumns tree | commitdiff
2006-07-17 amwaterhouseTowards an auto dbref fetcher tree | commitdiff
2006-07-14 amwaterhouseJust fetch features for selected seqs tree | commitdiff
2006-07-13 amwaterhouseSelected DAS sources may differ from default tree | commitdiff
2006-07-12 amwaterhouseAppend start and end tree | commitdiff
2006-07-07 amwaterhouseDont discard label if different to H or E tree | commitdiff
2006-07-07 amwaterhouseMake 1.1 compatible tree | commitdiff
2006-07-07 amwaterhouseMove position of stopLoading for 1.5 people tree | commitdiff
2006-07-07 amwaterhousemake 1.1 compatible tree | commitdiff
2006-07-07 amwaterhouseDont write graph type twice tree | commitdiff
2006-07-07 amwaterhouseReplaced by AnnotationFile tree | commitdiff
2006-06-23 amwaterhouseUniprot may have several accession ids tree | commitdiff
2006-06-23 amwaterhouseParse HTML links from jalview features file tree | commitdiff
2006-06-22 amwaterhouseTakes AlignFrame as arg, to update progressbar tree | commitdiff
2006-06-22 amwaterhouseYe olde SequenceFeatureFetcher tree | commitdiff
2006-06-22 amwaterhouseRenamed to DBRefFetcher tree | commitdiff
next