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JAL-3091 release notes for JAL-3104
[jalview.git] / src / jalview / io /
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... tree | commitdiff
2018-08-22 Jim ProcterJAL-2988 workaround for jalview save as dialogs - clear... tree | commitdiff
2018-08-03 Ben SoaresJAL-3061 tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-30 bsoaresFixed bug ignoring "alpha" extended braces in RNA SS... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2017-11-30 Jim ProcterJAL-2849 fix tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'imp/JAL-2810_ftsIDtab' into develop tree | commitdiff
2017-11-13 gmungocJAL-2176 removed unused Sequence.index tree | commitdiff
2017-10-27 Jim ProcterJAL-2804 kludge method to test if last key event handle... tree | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop tree | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview tree | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... tree | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage tree | commitdiff
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url tree | commitdiff
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently... tree | commitdiff
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system... tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Feature... tree | commitdiff
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description tree | commitdiff
2017-05-22 gmungocJAL-2543 identify as JSON before HTML tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-19 gmungocJAL-2490 refactored test for 'hasFeatures' tree | commitdiff
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation... tree | commitdiff
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie... tree | commitdiff
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating... tree | commitdiff
2017-05-15 tcofoegbuJAL-2533 improvement to prune off file extension when... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... tree | commitdiff
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... tree | commitdiff
2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in Sequenc... tree | commitdiff
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 tcofoegbuJAL-2484 adjusted default cache settings panel's left... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 tcofoegbuJAL-1648 improvements: enter key closes the popup and... tree | commitdiff
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues tree | commitdiff
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... tree | commitdiff
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures() tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 bug fix tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 tcofoegbuJAL-1648 House keeping tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 tcofoegbuJAL-1648 added unit test for AppCache tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-04-20 tcofoegbuJAL-2484 minor house-keeping tree | commitdiff
2017-04-20 tcofoegbuJAL-2484 minor house-keeping and code docs tree | commitdiff
2017-04-20 tcofoegbuJAL-2484 added improvement to enable clearing cache... tree | commitdiff
2017-04-20 tcofoegbuJAL-1648 refactored and improved caching architecture... tree | commitdiff
2017-04-11 tcofoegbuJAL-1648 Fix review issue - remove usage of String... tree | commitdiff
2017-04-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-03 tcofoegbuJAL-1648 Added improvement to persist cache items to... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-27 gmungocJAL-2416 class Javadoc updates prior to parsing changes tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text... tree | commitdiff
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