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JAL-4059 Converting Pattern/Matcher methods that are possibly incompatible with JS...
[jalview.git]
/
src
/
jalview
/
jbgui
/
2023-08-18
Ben Soares
Merge branch 'improvement/JAL-4206_improve_JalviewFileC...
tree
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commitdiff
2023-08-18
Ben Soares
Merge branch 'feature/JAL-244_Automatically_adjust_left...
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2023-07-21
Ben Soares
JAL-244 Fixed idWidth labels in headless mode for non...
tree
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commitdiff
2023-06-13
Ben Soares
JAL-3416 Removed a few more JInternalFrame icons with...
tree
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commitdiff
2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
tree
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commitdiff
2023-05-22
James Procter
Merge branch 'JAL-1551_2_11_3_spotlett' into features...
tree
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commitdiff
2023-05-20
Ben Soares
JAL-3416 Ensure setFrameIcon(null) is set for remaining...
tree
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commitdiff
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-01
James Procter
JAL-4177 disable ‘Cancel’ as well - since we as yet...
features/JAL-4134_treeviewerforcolumns
tree
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commitdiff
2023-05-01
James Procter
JAL-4123 JAL-3914 JAL-3858 tweak wording and layout...
tree
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commitdiff
2023-04-22
Ben Soares
JAL-629 Test and fix --annotation --ssannotation args...
tree
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commitdiff
2023-02-27
Ben Soares
JAL-629 Guesstimate whether to set pLDDT with PDB file
tree
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commitdiff
2023-02-26
Ben Soares
JAL-629 PAE matrix file guesstimate from filename
tree
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commitdiff
2023-02-24
Ben Soares
JAL-629 Position GUI widgets for PDF file options....
tree
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commitdiff
2023-02-24
Ben Soares
JAL-629 add widgets to StructureChooser for tempfac...
tree
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commitdiff
2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
tree
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commitdiff
2022-10-29
Ben Soares
JAL-1988 JAL-3772 removed a debugging log line
tree
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commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
tree
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commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Fixed wait between waitDialog appeara...
tree
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commitdiff
2022-10-27
Ben Soares
JAL-1988 Allow generic Container object in JvOptionPane...
tree
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 wait timer working first time but...
tree
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
tree
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commitdiff
2022-09-26
Ben Soares
JAL-1988 JAL-3772 linked undostack to saved changes...
tree
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commitdiff
2022-09-23
Ben Soares
JAL-1988 JAL-3772 Quit confirmation dialog boxes with...
tree
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commitdiff
2022-09-16
Jim Procter
JAL-4062 copy highlighted region docs, new Alignment...
tree
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 button in Find dialog to copy highlig...
tree
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 Find can now search features
tree
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commitdiff
2022-09-02
Ben Soares
JAL-1988 Added a saves in progress check for quit
tree
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commitdiff
2022-08-31
Ben Soares
JAL-1988 added a saveInProgress stack to BackupFiles
tree
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commitdiff
2022-07-25
Ben Soares
JAL-4034 button looks better also on other OSes with...
tree
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commitdiff
2022-07-24
Ben Soares
JAL-4034 add round corners to 3DB confirmation button...
tree
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commitdiff
2022-07-15
Ben Soares
JAL-4034 Use the new non-modal JDialog for 3DBeacons...
tree
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commitdiff
2022-07-04
Jim Procter
JAL-4034 Fix #2 show an icon and a button to press...
tree
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commitdiff
2022-06-28
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-28
Ben Soares
JAL-1988 Don't put Quit in the File menu if there's...
tree
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commitdiff
2022-06-23
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-23
Ben Soares
JAL-1988 Check for setHandler capability to avoid About...
tree
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commitdiff
2022-06-17
Ben Soares
JAL-3027 Avoid FlatLAF Desktop class is JalviewJS
tree
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commitdiff
2022-06-15
Jim Procter
JAL-1988 JAL-3416 avoid unnecessary static flag
tree
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commitdiff
2022-06-15
Jim Procter
JAL-3418 JAL-1988 don’t need java version check anymore
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Hack to ensure Quit dialog box is moved to...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Moved APQHandlers to jalview.jbgui and called...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Removed code and unused widgets for defaultBrowser
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Put jalview.jar first in getdown for .properti...
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2022-01-27
Jim Procter
Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
tree
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commitdiff
2021-11-03
Jim Procter
JAL-3915 remove RNAview opts from preferences. Still...
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3616 show name of structure viewer in ‘new view...
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3829 fetch 3D beacons now started by clicking butto...
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 open web page for 3d beacons structure by...
features/r2_11_2/JAL-3829_3dbeacons
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 right click to view popup menu to show link...
tree
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commitdiff
2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
tree
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commitdiff
2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
tree
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commitdiff
2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
tree
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commitdiff
2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queri...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
tree
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commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 missed a widget being disabled
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 Added a Startup tab in Preferences, with gui...
tree
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commitdiff
2021-03-05
Ben Soares
JAL-3618 Enable appBundleIsTraversable in JFileChooser...
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3775 JAL-3633 Make java.net.Authenticator code...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3775 Eclipse re-formatting commit
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 last minute refinement so password box doesn...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Apply (proxy) button enabled when needed
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Small changes to allow future fitting with...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Set proxy preferences before web calls in...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Memory only proxy auth password storage. Open...
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Added Proxy Authentication credentials in...
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Added Preferences for Proxy Authentication...
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 label.proxy_server -> label.proxy_servers
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Remember system set proxy properties. Add...
tree
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commitdiff
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
tree
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commitdiff
2020-06-29
Jim Procter
Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...
tree
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commitdiff
2020-06-29
gmungoc
JAL-3518 corrected pulled up focusView() command
tree
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commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
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commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
tree
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commitdiff
2020-01-31
gmungoc
JAL-2422 more responsive Chimera/X path prompts in...
tree
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commitdiff
2020-01-28
gmungoc
JAL-2422 ChimeraX added to Preferences
tree
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commitdiff
2020-01-16
Jim Procter
Merge branch 'improvement/JAL-3474_lots_of_.cvsignore_f...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 extract constants for number of rows in layout
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3130 can't read java.specification.version...
tree
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commitdiff
2019-11-01
Ben Soares
JAL-3474 removed all .cvsignore files stored in the...
improvement/JAL-3474_lots_of_.cvsignore_files
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
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