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JAL-4034 fix 1 - reword button
[jalview.git] / src / jalview / project / Jalview2XML.java
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 blob | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... blob | commitdiff | diff to current
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... blob | commitdiff | diff to current
2022-01-17 Ben Soaresclose filehandles straight after parse, without setting... blob | commitdiff | diff to current
2022-01-11 Ben Soaresclose filehandles straight after parse, without setting... blob | commitdiff | diff to current
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... blob | commitdiff | diff to current
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project blob | commitdiff | diff to current
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit blob | commitdiff | diff to current
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls blob | commitdiff | diff to current
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls blob | commitdiff | diff to current
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol blob | commitdiff | diff to current
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... blob | commitdiff | diff to current
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol blob | commitdiff | diff to current
2020-05-15 gmungocJAL-3619 default silently to Jmol if viewerType absent... blob | commitdiff | diff to current
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project blob | commitdiff | diff to current
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... blob | commitdiff | diff to current
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX blob | commitdiff | diff to current
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... blob | commitdiff | diff to current
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... blob | commitdiff | diff to current
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures blob | commitdiff | diff to current
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... blob | commitdiff | diff to current
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-06-07 gmungocJAL-3187 save and restore flags for show complement... blob | commitdiff | diff to current
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures blob | commitdiff | diff to current
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... blob | commitdiff | diff to current
2019-06-06 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows blob | commitdiff | diff to current
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java) blob | commitdiff | diff to current
2019-03-27 hansonrconsolidation of Platform isJS calls blob | commitdiff | diff to current
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... blob | commitdiff | diff to current
2019-03-15 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all... blob | commitdiff | diff to current
2019-03-14 gmungocJAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS blob | commitdiff | diff to current
2019-03-13 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 blob | commitdiff | diff to current
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups blob | commitdiff | diff to current
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... blob | commitdiff | diff to current
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... blob | commitdiff | diff to current
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... blob | commitdiff | diff to current
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 blob | commitdiff | diff to current
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... blob | commitdiff | diff to current
2019-01-23 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures blob | commitdiff | diff to current
2019-01-23 gmungocJAL-3063 correct handling of absent choice element... blob | commitdiff | diff to current
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct... blob | commitdiff | diff to current
2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed... blob | commitdiff | diff to current
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... blob | commitdiff | diff to current
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop blob | commitdiff | diff to current
2019-01-11 hansonr(commented out but potentially useful) methods to tap... blob | commitdiff | diff to current
2018-12-21 gmungocJAL-1767 minimise local variable scope blob | commitdiff | diff to current
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 blob | commitdiff | diff to current
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... blob | commitdiff | diff to current
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... blob | commitdiff | diff to current
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... blob | commitdiff | diff to current
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view blob | commitdiff | diff to current
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... blob | commitdiff | diff to current
2018-12-03 gmungocJAL-3063 Castor removed from codebase blob | commitdiff | diff to current
2018-11-15 gmungocJAL-3063 remove commented code, suppress debug output blob | commitdiff | diff to current
2018-11-07 hansonrJAL-3026-JAL-3063 JAXB unmarshaller fix blob | commitdiff | diff to current
2018-11-07 hansonrJAL-3026-JAL-3063 session test files blob | commitdiff | diff to current
2018-11-06 hansonrJAXB marshalling by JavaScript successfully unmarshalle... blob | commitdiff | diff to current
2018-11-02 hansonrMarshalling produces valid ZIP file. Unmarshalling... blob | commitdiff | diff to current
2018-10-30 hansonrJAL-3026-JAL-3063 adds binary ext to J2S blob | commitdiff | diff to current
2018-09-24 gmungocJAL-3063 tidy commented out code blob | commitdiff | diff to current
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... blob | commitdiff | diff to current
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB blob | commitdiff | diff to current
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... blob | commitdiff | diff to current