JAL-4034 fix 1 - reword button
[jalview.git] / src / jalview / project / Jalview2XML.java
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-01-17 Ben Soaresclose filehandles straight after parse, without setting...
2022-01-11 Ben Soaresclose filehandles straight after parse, without setting...
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction...
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-15 gmungocJAL-3619 default silently to Jmol if viewerType absent...
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera...
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued...
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename...
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-06-07 gmungocJAL-3187 save and restore flags for show complement...
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
2019-06-06 gmungocMerge branch 'develop' into trialMerge
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java)
2019-03-27 hansonrconsolidation of Platform isJS calls
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-15 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all...
2019-03-14 gmungocJAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into...
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b...
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
2019-01-23 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-01-23 gmungocJAL-3063 correct handling of absent choice element...
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct...
2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed...
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur...
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop
2019-01-11 hansonr(commented out but potentially useful) methods to tap...
2018-12-21 gmungocJAL-1767 minimise local variable scope
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence...
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists...
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via...
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
2018-12-03 gmungocJAL-3063 Castor removed from codebase
2018-11-15 gmungocJAL-3063 remove commented code, suppress debug output
2018-11-07 hansonrJAL-3026-JAL-3063 JAXB unmarshaller fix
2018-11-07 hansonrJAL-3026-JAL-3063 session test files
2018-11-06 hansonrJAXB marshalling by JavaScript successfully unmarshalle...
2018-11-02 hansonrMarshalling produces valid ZIP file. Unmarshalling...
2018-10-30 hansonrJAL-3026-JAL-3063 adds binary ext to J2S
2018-09-24 gmungocJAL-3063 tidy commented out code
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional...
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...