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JAL-4059 Converting Pattern/Matcher methods that are possibly incompatible with JS...
[jalview.git]
/
src
/
jalview
/
renderer
/
2023-09-28
James Procter
JAL-3858 improved contactInterval computation and added...
tree
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commitdiff
2023-09-25
James Procter
JAL-3858 minimum value for a range is used to shade...
tree
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commitdiff
2023-09-25
James Procter
JAL-3858 javadoc and slightly revised green linear...
tree
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commitdiff
2023-09-16
Ben Soares
JAL-4250 Fixed blue arrows in drawStemAnnot()
tree
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commitdiff
2023-08-24
Ben Soares
JAL-4250 Fix bug in vector rendition where more than...
improvement/JAL-4250_secondary_structure_annotation_antialias
tree
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commitdiff
2023-08-24
Ben Soares
JAL-4250 Much simplified glyph creation removing most...
tree
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commitdiff
2023-08-23
Ben Soares
JAL-4250 Updated jfreesvg to fix round stroke in linegraph.
tree
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commitdiff
2023-08-23
Ben Soares
JAL-4250 Simplification of polygons and adjustments...
tree
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commitdiff
2023-08-21
Ben Soares
JAL-4250 revert green to bright green
tree
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commitdiff
2023-08-21
Ben Soares
JAL-4250 Conservative setting of ANTIALIAS and readjust...
tree
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commitdiff
2023-08-18
Ben Soares
JAL-4250 Make secondary structure annotation shapes...
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
tree
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commitdiff
2023-05-25
James Procter
JAL-4134 popup menu and annotation row property to...
tree
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commitdiff
2023-05-22
James Procter
JAL-1551 spotless
tree
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commitdiff
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
tree
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commitdiff
2023-05-12
James Procter
JAL-2349 allow PAE or other contact matrices to hold...
tree
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commitdiff
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
tree
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commitdiff
2023-03-24
James Procter
JAL-4158 first attempt at stashing colours for contact...
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 JAL-2381 allow different linear shading scheme...
tree
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commitdiff
2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
tree
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commitdiff
2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
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commitdiff
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
tree
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commitdiff
2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
tree
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commitdiff
2022-10-21
Jim Procter
JAL-2349 JAL-3855 experiment masking hidden columns...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 off by one and daft return
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 avoid div-by-zero when annotation height is...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-4033 fix drag selections and distinguish row/column...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-3855 RGB colours from the alphafold paE scale.
tree
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commitdiff
2022-10-19
Jim Procter
JAL-2349 JAL-4033 refactored contact matrix geom calc...
tree
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commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 column selection highlighting
tree
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commitdiff
2022-10-15
Jim Procter
JAL-3855 2349 TODO
tree
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commitdiff
2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
tree
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commitdiff
2022-09-14
Jim Procter
Merge branch 'bug/JAL-3612_overviewFeatureOrdering...
tree
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commitdiff
2022-06-24
Jim Procter
JAL-2349 JAL-3855 formatting
tree
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commitdiff
2022-06-24
Jim Procter
JAL-4033 TODO re highlighting current column selection
tree
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commitdiff
2022-06-24
Jim Procter
JAL-2349 debugged and simplified (a little) the scaled...
tree
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commitdiff
2022-06-24
Jim Procter
JAL-2349 JAL-3855 resolve sequence position for contact...
tree
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commitdiff
2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2022-02-07
Jim Procter
JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit...
bug/JAL-3785autoOverviewTitle
tree
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commitdiff
2021-09-17
Jim Procter
JAL-3079 JAL-3055 remember to reset font transform...
tree
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commitdiff
2021-08-18
Jim Procter
JAL-2349 - deobfuscate the renderer and fix it .. work...
tree
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commitdiff
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
tree
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commitdiff
2020-12-11
gmungoc
JAL-3612 use _last_ drawn colour per feature type in...
bug/JAL-3612_overviewFeatureOrdering
tree
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commitdiff
2020-12-11
gmungoc
JAL-1713 fix typo; overview in project with open overvi...
tree
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commitdiff
2020-12-10
gmungoc
JAL-1713 refactorings to allow save/restore Overview...
tree
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commitdiff
2020-08-13
gmungoc
JAL-3597 additional references nulled, bug in test...
tree
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commitdiff
2020-07-14
gmungoc
JAL-3597 additional references nulled, bug in test...
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 change redacted
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 don't draw text over features if Show Text...
tree
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commitdiff
2020-04-07
gmungoc
JAL-3210 fudge for JalviewJS to avoid IntervalStore...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
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commitdiff
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
tree
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commitdiff
2019-03-27
hansonr
isJS cleanup
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datam...
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 reduced scope of rendering flags
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
tree
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commitdiff
2019-02-21
gmungoc
JAL-3187 handle no mapping / complement features withou...
tree
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commitdiff
2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
tree
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commitdiff
2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2019-01-25
gmungoc
JAL-3187 return a colour for linked features with trans...
tree
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commitdiff
2019-01-23
gmungoc
JAL-3187 fix out by one feature on structure position
tree
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commitdiff
2019-01-22
gmungoc
JAL-3187 clunky sort by renderorder in findComplementFe...
tree
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commitdiff
2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
tree
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commitdiff
2019-01-21
hansonr
minor Platform.isAMac() clean up
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 draw complement features on alignment / structure
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 unit tests updated and errors caught
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
tree
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commitdiff
2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
tree
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commitdiff
2018-08-30
gmungoc
JAL-3055 refinements to alternatives to deriveFont
tree
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commitdiff
2018-08-28
gmungoc
JAL-3055 corrected logo drawing in JS
tree
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commitdiff
2018-08-28
gmungoc
JAL-3055 corrections to use of AffineTransform to scale...
tree
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commitdiff
2018-08-27
gmungoc
JAL-3055 restore original deriveFont code for Java...
tree
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commitdiff
2018-07-03
Jim Procter
JAL-2347 first pass at JAL-2347 - doesn’t quite work...
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-27
hansonr
Consensus LOGO done
tree
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commitdiff
2018-06-26
gmungoc
JAL-3032 don't draw AlphaComposite.Clear on background
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-21
gmungoc
JAL-2929 use configure Overview gap colour instead...
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-06
kiramt
Merge branch 'develop' into feature/JAL-2759
feature/JAL-2759
tree
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
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