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JAL-3989 Code tidying, added JVL_HEADER for older versions of Jalview, allow time...
[jalview.git]
/
src
/
jalview
/
renderer
/
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2021-09-17
Jim Procter
JAL-3079 JAL-3055 remember to reset font transform...
tree
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commitdiff
2020-08-13
gmungoc
JAL-3597 additional references nulled, bug in test...
tree
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commitdiff
2020-07-14
gmungoc
JAL-3597 additional references nulled, bug in test...
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 change redacted
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 don't draw text over features if Show Text...
tree
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commitdiff
2020-04-07
gmungoc
JAL-3210 fudge for JalviewJS to avoid IntervalStore...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
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commitdiff
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
tree
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commitdiff
2019-03-27
hansonr
isJS cleanup
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datam...
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 reduced scope of rendering flags
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
tree
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commitdiff
2019-02-21
gmungoc
JAL-3187 handle no mapping / complement features withou...
tree
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commitdiff
2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
tree
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commitdiff
2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2019-01-25
gmungoc
JAL-3187 return a colour for linked features with trans...
tree
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commitdiff
2019-01-23
gmungoc
JAL-3187 fix out by one feature on structure position
tree
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commitdiff
2019-01-22
gmungoc
JAL-3187 clunky sort by renderorder in findComplementFe...
tree
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commitdiff
2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
tree
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commitdiff
2019-01-21
hansonr
minor Platform.isAMac() clean up
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 draw complement features on alignment / structure
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 unit tests updated and errors caught
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
tree
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commitdiff
2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
tree
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commitdiff
2018-08-30
gmungoc
JAL-3055 refinements to alternatives to deriveFont
tree
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commitdiff
2018-08-28
gmungoc
JAL-3055 corrected logo drawing in JS
tree
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commitdiff
2018-08-28
gmungoc
JAL-3055 corrections to use of AffineTransform to scale...
tree
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commitdiff
2018-08-27
gmungoc
JAL-3055 restore original deriveFont code for Java...
tree
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commitdiff
2018-07-03
Jim Procter
JAL-2347 first pass at JAL-2347 - doesn’t quite work...
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-27
hansonr
Consensus LOGO done
tree
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commitdiff
2018-06-26
gmungoc
JAL-3032 don't draw AlphaComposite.Clear on background
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-21
gmungoc
JAL-2929 use configure Overview gap colour instead...
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-06
kiramt
Merge branch 'develop' into feature/JAL-2759
feature/JAL-2759
tree
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 reinstate change from develop (JAL-2636) someh...
tree
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commitdiff
2017-11-10
kiramt
JAL-2827 related fixes for stem and non-canonical annot...
bug/JAL-2827
tree
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commitdiff
2017-11-09
kiramt
JAL-2827 Fix notched repaint of helix annotation when...
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
JAL-2816 tweaks to feature visibility checks
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 feature filters held on FeatureRenderer, getCo...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2609attemptedmerge' into develop
tree
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commitdiff
2017-10-20
gmungoc
Push 1793 latest to spike branch
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2481 patch to fix findFeatureColour for end-of...
tree
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commitdiff
2017-10-10
kiramt
Merge remote-tracking branch 'origin/features/JAL-2609f...
tree
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commitdiff
2017-10-09
Jim Procter
JAL-2446 remove duplicate code from pulled up method.
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 more adjustments to locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Simplify locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 fix up interface of locateVisibleBoundsOfSequence
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2527 move default colours for applet / application...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'bug/JAL-2704gapColourFading' into documen...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-08-31
kiramt
JAL-2527 Updates following code review
tree
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commitdiff
2017-08-31
gmungoc
JAL-2704 unit test for Above PID gap colour, simplified...
bug/JAL-2704gapColourFading
tree
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commitdiff
2017-08-30
gmungoc
JAL-2704 don't shade gap colour for PID/conservation
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Code comments, tidy
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Added default setting/resetting and first...
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Wired up cached values to overview
tree
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commitdiff
2017-08-30
kiramt
Merge remote-tracking branch 'origin/feature/2588'...
tree
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commitdiff
2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
tree
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commitdiff
2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Removed duplicate events fired to progress bar
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Update overview progress bar while drawing...
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Progress bar sizing tweaks
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Made progress bar display before overview...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2609fastPaintW...
tree
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commitdiff
2017-08-21
Jim Procter
JAL-2588 don’t test char==gap until we know the shader...
feature/2588
tree
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commitdiff
2017-08-21
Jim Procter
JAL-2588 field on overview colour finder for default...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
Jim Procter
Merge branch 'feature/2588' into merge/develop_feature...
tree
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commitdiff
2017-08-18
kiramt
JAL-2664 Adjusted colour of hidden cols/seqs
tree
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commitdiff
2017-08-18
kiramt
JAL-2664 Correct colouring for rows
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-14
kiramt
JAL-2664 Initial change to drawing hidden regions in...
tree
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commitdiff
2017-08-08
kiramt
JAL-2587 Added progress bar to overview. Not fully...
tree
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commitdiff
2017-08-01
gmungoc
JAL-2636 draw scale marks up to second last column
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-23
gmungoc
JAL-2481 JAL-2624 test for render feature below score...
tree
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commitdiff
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