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format adapter should return AlignmentI
[jalview.git] / src / jalview / schemes /
2012-11-15 jproctersource formatting tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA... tree | commitdiff
2012-09-06 jprocterJAL-1167 method and simple tests for printing score... tree | commitdiff
2012-08-31 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associa... tree | commitdiff
2012-08-17 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. tree | commitdiff
2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f9411... tree | commitdiff
2012-07-16 Anne MenardLast version tree | commitdiff
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2012-07-10 Anne Menardv2 tree | commitdiff
2012-07-05 Anne MenardAdd support RNAML format tree | commitdiff
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes... tree | commitdiff
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for... tree | commitdiff
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop tree | commitdiff
2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by... tree | commitdiff
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... tree | commitdiff
2012-05-23 jproctertodo for JAL-1106 tree | commitdiff
2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation... tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2011-12-08 jprocter(JAL-1013) gap character index for each sequence alphabet tree | commitdiff
2011-12-08 jprocterJAL-1027 fixed up nucleotide subt matrix so it is symme... tree | commitdiff
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is... tree | commitdiff
2011-10-28 jprocterrefactor to use model API tree | commitdiff
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-08-04 jprocterreorganised colourscheme enumeration to make it easier... tree | commitdiff
2010-05-14 jprocterfix for JAL-533 tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2010-04-16 jprocterdefault for colourBylabel is false tree | commitdiff
2010-04-14 jproctertodo and disable selection sharing between views on... tree | commitdiff
2010-04-02 jprocterjavadoc tree | commitdiff
2010-04-02 jproctermade threshold type enumaration into set of constants tree | commitdiff
2009-09-10 jprocterfix null pointer exception when using blosum colourscheme tree | commitdiff
2009-08-21 jprocterasparagine is polar but not charged tree | commitdiff
2009-07-24 jprocterfeature colour by label flag/style tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2009-06-01 jprocteradded graduated colourscheme support for feature file tree | commitdiff
2009-03-17 jprocterholds shading and range parameters rendering a feature... tree | commitdiff
2009-03-17 jprocterfixes launchApp bug where user defined colourscheme... tree | commitdiff
2008-11-12 jproctergracefully translate ambigous nucleotides as 'X' tree | commitdiff
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from... tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-08-11 jprocterEnsure 'None' translates into no colour scheme applied tree | commitdiff
2008-07-18 jprocterUser defined colourschemes are automatically generated... tree | commitdiff
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio... tree | commitdiff
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... tree | commitdiff
2007-08-08 jprocterhistidine should be midblue (noticed by Peter Knight... tree | commitdiff
2007-04-30 jprocterdssp 7-state to three state lookup tree | commitdiff
2007-04-27 amwaterhouseAnnotation gradient will use direct colours if no graph... tree | commitdiff
2007-04-27 amwaterhouseAllow threshold to be min/max tree | commitdiff
2007-04-11 jprocterfixed base lookup bug in dna pairwise alignment and... tree | commitdiff
2007-03-19 jprocternote about selenocystine. tree | commitdiff
2007-02-27 amwaterhousecheck conservation length tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space tree | commitdiff
2007-01-30 amwaterhouseconsensusColouring never used tree | commitdiff
2006-12-06 jproctergeneral pairwise substitution score models for pairwise... tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence... tree | commitdiff
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence... tree | commitdiff
2006-11-14 amwaterhousewe already have c defined tree | commitdiff
2006-11-13 amwaterhouseEnable lower case colours tree | commitdiff
2006-11-09 amwaterhouseCheck conensus is not null tree | commitdiff
2006-10-12 amwaterhouseNull element checked tree | commitdiff
2006-10-10 amwaterhouseCheck on null consensus tree | commitdiff
2006-10-10 amwaterhouseaaIndex replaces aaHash tree | commitdiff
2006-10-06 amwaterhouseSet consensus as hashtble[] tree | commitdiff
2006-10-05 amwaterhouselower case available tree | commitdiff
2006-09-11 amwaterhouseComment out lower case colouring for bug fix release tree | commitdiff
2006-08-30 amwaterhouseGap added to aa3Hash tree | commitdiff
2006-08-30 amwaterhouseUser colours are case sensitive tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-06-14 amwaterhouseparseAppletParameter tree | commitdiff
2006-06-09 amwaterhousecreateColourFromName tree | commitdiff
2006-04-07 amwaterhouseMust check consensus length if autocalculate off tree | commitdiff
2006-04-05 amwaterhousepublic get methods tree | commitdiff
2006-03-24 amwaterhouseGroup colours not used tree | commitdiff
2006-03-16 amwaterhouseOut of bounds check tree | commitdiff
2006-02-16 amwaterhouseDont colour gaps tree | commitdiff
2006-02-16 amwaterhouseUse original colour scheme as base for annotation colouring tree | commitdiff
2006-02-15 amwaterhouseThreshold is a single element tree | commitdiff
2006-02-09 amwaterhouseIf conservation is zero, colour is white tree | commitdiff
2006-02-08 amwaterhouseColour above or below threshold tree | commitdiff
2006-02-03 amwaterhouseConservation colouring does what it should always have... tree | commitdiff
2006-02-03 amwaterhouseMake java 1.1 compatible tree | commitdiff
2006-01-30 amwaterhouseGet min and max colour added tree | commitdiff
2006-01-30 amwaterhouseNew files tree | commitdiff
2005-12-06 amwaterhouseafter merge tree | commitdiff
2005-11-18 jprocteradded 3 letter IUB codes for ambiguous residues/bases tree | commitdiff
2005-10-07 amwaterhousecomma separated rgb values tree | commitdiff
2005-09-22 amwaterhouseAdd nucleotide names tree | commitdiff
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