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Mapping to PDB added
[jalview.git]
/
src
/
jalview
/
schemes
/
2005-10-26
amwaterhouse
vamsasDemo new branch
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commitdiff
2005-10-07
amwaterhouse
comma separated rgb values
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commitdiff
2005-09-22
amwaterhouse
Add nucleotide names
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commitdiff
2005-09-15
amwaterhouse
Add Uracil as X unknown
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commitdiff
2005-09-08
amwaterhouse
If vconsensus is null, return
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commitdiff
2005-09-08
amwaterhouse
Add lowercase nucleotides to nucleotideHash
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commitdiff
2005-08-30
amwaterhouse
Make 24 colours to be sure
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commitdiff
2005-08-29
amwaterhouse
Default user colour is 23 white colours
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commitdiff
2005-08-22
amwaterhouse
finalize all these hashtables
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commitdiff
2005-08-22
amwaterhouse
Conservation colour scheme is no more
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commitdiff
2005-08-18
amwaterhouse
Character methods don't exist in java 1.1
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commitdiff
2005-08-18
amwaterhouse
Proceed with upperCase residue
Release_2_03
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commitdiff
2005-08-18
amwaterhouse
Use aa index for aboveThreshold as well as colour index
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commitdiff
2005-08-17
amwaterhouse
Scheme name added
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commitdiff
2005-08-15
amwaterhouse
Remove null check
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commitdiff
2005-08-15
amwaterhouse
super.setconsensus
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commitdiff
2005-08-15
amwaterhouse
Percentage precalculated in aafrequency
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commitdiff
2005-08-15
amwaterhouse
Add taylor to default colour check
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commitdiff
2005-08-15
amwaterhouse
Hashtable now in array, not vector
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-13
amwaterhouse
Get colourScheme with seqs and width
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-05-25
amwaterhouse
reset colours added
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commitdiff
2005-05-25
amwaterhouse
all can threshold
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
2005-05-19
amwaterhouse
returns name if given colourscheme
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commitdiff
2005-05-03
amwaterhouse
1.1 compatible, formatting changes
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commitdiff
2005-04-29
amwaterhouse
just tidying up unused imports
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commitdiff
2005-04-28
amwaterhouse
no longer used
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commitdiff
2005-04-28
amwaterhouse
must set consensus in child colourscheme
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commitdiff
2005-04-28
amwaterhouse
Updated for use by preferences panel
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commitdiff
2005-04-15
amwaterhouse
no longer used
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commitdiff
2005-04-15
amwaterhouse
consensus held in residueColour
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commitdiff
2005-04-14
amwaterhouse
blosum colour now displayed ok
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commitdiff
2005-04-13
jprocter
Fixed so that all alternate residues are used to calcul...
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commitdiff
2005-04-11
jprocter
Conservation symbols : + = all props are conserved...
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commitdiff
2005-03-23
amwaterhouse
no longer used
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commitdiff
2005-03-23
amwaterhouse
secondarycolour not used
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commitdiff
2005-03-08
amwaterhouse
add lower case residue props
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commitdiff
2005-03-08
amwaterhouse
if resIndex > 19 return color.white
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commitdiff
2005-02-23
jprocter
bug fix for unaligned sequence sets and clustal colours...
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commitdiff
2005-02-10
amwaterhouse
check that we're not off the end of a sequence
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commitdiff
2005-02-01
amwaterhouse
No need for drawableSequence
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commitdiff
2005-02-01
amwaterhouse
Clustal colours now work
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commitdiff
2005-01-24
amwaterhouse
returns color.white if the underlying colourscheme...
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commitdiff
2005-01-21
amwaterhouse
remove a few imports
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commitdiff
2005-01-21
amwaterhouse
Nucleotide colours added
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commitdiff
2005-01-21
amwaterhouse
New colourScheme
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commitdiff
2005-01-17
amwaterhouse
ClustalX added to ColourProperties
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commitdiff
2005-01-14
amwaterhouse
Return color.white if a gap char is detected
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commitdiff
2004-12-15
amwaterhouse
colours are right, but not the conservation bit!!
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commitdiff
2004-12-15
amwaterhouse
no need to send sequence to determine residue colour
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commitdiff
2004-12-15
amwaterhouse
Added for the moment, only used by ClustalxColourScheme
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commitdiff
2004-12-15
amwaterhouse
No need to sened sequence to determine residue colour
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commitdiff
2004-12-15
amwaterhouse
isGap method implemented in utils, and optimized
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commitdiff
2004-12-15
amwaterhouse
isGap method implemented in utils
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commitdiff
2004-12-14
amwaterhouse
PID Colour scheme now operational!
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commitdiff
2004-12-14
amwaterhouse
Getcolours is not needed ????
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commitdiff
2004-12-10
amwaterhouse
No longer exclusive to SequenceGroups
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commitdiff
2004-12-03
amwaterhouse
Space char added
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commitdiff
2004-12-03
amwaterhouse
remove import of jbgui
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commitdiff
2004-11-18
amwaterhouse
space removed
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commitdiff
2004-11-16
amwaterhouse
remove jbgui import
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commitdiff
2004-11-16
amwaterhouse
remove system.out
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commitdiff
2004-11-16
amwaterhouse
Add only colours that currently work
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commitdiff
2004-11-16
amwaterhouse
new file
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commitdiff
2004-11-04
amwaterhouse
removed import jbgui line
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commitdiff
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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commitdiff
git://source.jalview.org / jalview.git / history