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JAL-2416 order score models by order of addition rather than name
[jalview.git]
/
src
/
jalview
/
util
/
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-25
gmungoc
JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-20
gmungoc
JAL-2383 check for null, spelling
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-10
gmungoc
JAL-2377 avoid infinite loop formatting 1.0E-310
tree
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commitdiff
2017-01-10
kiramt
JAL-2316 Separate label/db name in UrlProviders. Unit...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
JAL-2360 findColour() with no args removed from ColourS...
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-16
kiramt
JAL-2316 Added database name column to URL links table...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-13
kiramt
Merge branch 'develop' into features/JAL-2316
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
tree
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commitdiff
2016-12-07
gmungoc
JAL-2344 handle null format, simplify JalviewFileChoose...
tree
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commitdiff
2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
tree
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commitdiff
2016-12-05
kiramt
JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-24
Jim Procter
JAL-2325 apply license to new source files
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
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commitdiff
2016-11-15
kiramt
JAL-2316 Moved url providers into own package
tree
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commitdiff
2016-11-15
kiramt
JAL-2316 Refactoring of functionality to provide urls...
tree
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commitdiff
2016-11-14
kiramt
Url links changes - incomplete checkin as battery low
tree
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commitdiff
2016-11-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-08
tcofoegbu
JAL-2292 renamed method and improved implementation...
tree
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commitdiff
2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 added javadoc for compareChar(..) utility...
tree
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commitdiff
2016-11-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 Wrote utility method for comparing two char...
tree
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commitdiff
2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
tree
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commitdiff
2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
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commitdiff
2016-11-02
kiramt
JAL-2281 Use DBRefs.selectRefs to uppercase URL link...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Code tidy
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Renamed internal use of sequence id / db acces...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 URLLink unit tests updated
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 simplified repeat() method
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Refactor SequenceAnnotationReport to use refac...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Changed DB accession id token to $DB_ACCESSION...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Refactored URL link creation into UrlLink
tree
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commitdiff
2016-10-31
gmungoc
JAL-98 round when formatting dec places
tree
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commitdiff
2016-10-31
kiramt
Use ACCESSION_ID for database accession id, and SEQUENC...
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
tree
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commitdiff
2016-10-27
gmungoc
JAL-98 refactor bleachColour() to ColorUtils
tree
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commitdiff
2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
kiramt
Unit tests for UrlLink
bug/JAL-2281JAL-2282
tree
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commitdiff
2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-24
kiramt
Code tidy up. Unit test passes.
tree
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commitdiff
2016-10-22
kiramt
Working links menu
tree
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commitdiff
2016-10-21
kiramt
Factored URL Link constants out into UrlConstants file.
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 javadoc formatting only
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 bespoke fast percentage formatter for consensus...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 patch for when no DBRefs on sequence
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 formatting
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 promote direct dbrefs from verified sources...
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 extracted class ChainId to jalview.util.CaseIn...
tree
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commitdiff
2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
tree
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commitdiff
2016-09-06
gmungoc
JAL-2147 additional test coverage for findMappingsForSe...
tree
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commitdiff
2016-09-05
gmungoc
JAL-2154 made Java 7 compatible
tree
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commitdiff
2016-08-31
gmungoc
JAL-2077 more javadoc
tree
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commitdiff
2016-08-30
Jim Procter
JAL-2154 always compare canonicalised DBRefEntry source...
tree
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commitdiff
2016-08-30
Jim Procter
JAL-2154 simplify expression
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 canonical dbsources are lowercased before...
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 ENA specific Ensembl canonical db prefixes
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbR...
tree
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commitdiff
2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
tree
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commitdiff
2016-08-18
gmungoc
JAL-2077 handling Cmd-click in scale panel for Mac...
tree
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commitdiff
2016-08-09
Jim Procter
JAL-2154 test for CDS->protein map
tree
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commitdiff
2016-08-07
Jim Procter
JAL-2154 add in missing class for createDatasetAlignmen...
tree
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commitdiff
2016-08-04
Jim Procter
JAL-2154 test for CDS->protein map
tree
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commitdiff
2016-07-14
Jim Procter
JAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-17
tcofoegbu
JAL-1976 clear message if export is cancelled at 'Rende...
tree
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commitdiff
2016-06-17
tcofoegbu
JAL-1976 added an intermediate message between a user...
tree
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commitdiff
2016-06-15
Jim Procter
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-14
gmungoc
JAL-2114 more helpful reporting of parse failures
tree
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commitdiff
2016-06-14
gmungoc
JAL-1686 JAL-2110 equals and/or hashCode method added
tree
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commitdiff
2016-06-09
gmungoc
JAL-2110 work in progress
tree
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commitdiff
2016-06-09
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-06-09
gmungoc
JAL-2114 corrected Javadoc
tree
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commitdiff
2016-06-03
gmungoc
JAL-2110 random stuff
tree
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commitdiff
2016-06-02
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-2077 fix: convenience method and checks for CMD...
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
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