JAL-2416 order score models by order of addition rather than name
[jalview.git] / src / jalview / util /
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocJAL-2383 check for null, spelling
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 kiramtJAL-2316 Added database name column to URL links table...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 Jim ProcterJAL-2325 apply license to new source files
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-15 kiramtJAL-2316 Moved url providers into own package
2016-11-15 kiramtJAL-2316 Refactoring of functionality to provide urls...
2016-11-14 kiramtUrl links changes - incomplete checkin as battery low
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation...
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility...
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char...
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent!
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link...
2016-11-02 kiramtJAL-2282 Code tidy
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-11-02 kiramtJAL-2282 URLLink unit tests updated
2016-11-01 gmungocJAL-98 simplified repeat() method
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac...
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION...
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink
2016-10-31 gmungocJAL-98 round when formatting dec places
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-24 kiramtCode tidy up. Unit test passes.
2016-10-22 kiramtWorking links menu
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file.
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-03 gmungocJAL-2110 javadoc formatting only
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-10-03 gmungocJAL-98 bespoke fast percentage formatter for consensus...
2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence
2016-09-27 Jim ProcterJAL-2210 formatting
2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources...
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty...
2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseIn...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe...
2016-09-05 gmungocJAL-2154 made Java 7 compatible
2016-08-31 gmungocJAL-2077 more javadoc
2016-08-30 Jim ProcterJAL-2154 always compare canonicalised DBRefEntry source...
2016-08-30 Jim ProcterJAL-2154 simplify expression
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-29 Jim ProcterJAL-2154 canonical dbsources are lowercased before...
2016-08-29 Jim ProcterJAL-2154 ENA specific Ensembl canonical db prefixes
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR...
2016-08-23 Jim ProcterMerge branch 'develop' into bug/JAL-2154projectMappings
2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac...
2016-08-09 Jim ProcterJAL-2154 test for CDS->protein map
2016-08-07 Jim ProcterJAL-2154 add in missing class for createDatasetAlignmen...
2016-08-04 Jim ProcterJAL-2154 test for CDS->protein map
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications...
2016-06-17 tcofoegbuJAL-1976 clear message if export is cancelled at 'Rende...
2016-06-17 tcofoegbuJAL-1976 added an intermediate message between a user...
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added
2016-06-09 gmungocJAL-2110 work in progress
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-09 gmungocJAL-2114 corrected Javadoc
2016-06-03 gmungocJAL-2110 random stuff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD...
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
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