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apparent bug in JpredFile parser where annotation was not being removed from alignmen...
[jalview.git]
/
src
/
jalview
/
util
/
2007-05-02
jprocter
fixed getIntervals bug to ensure it returns range from...
tree
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commitdiff
2007-04-30
jprocter
javadoc
tree
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commitdiff
2007-04-26
jprocter
double sort functions
tree
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commitdiff
2007-04-25
jprocter
moving word methods to MapList and begin bug-fix for...
tree
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commitdiff
2007-04-17
jprocter
proper copy constructor (not clone)
tree
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commitdiff
2007-04-02
amwaterhouse
addElement
tree
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commitdiff
2007-03-23
jprocter
removed Iterator usage.
tree
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commitdiff
2007-03-19
jprocter
New method for mapping from common database sources...
tree
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commitdiff
2007-03-19
jprocter
mapping implemented by MapList added to DBRefEntry.
tree
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commitdiff
2007-02-07
amwaterhouse
Formatting
tree
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commitdiff
2007-01-25
jprocter
checks for irreflexive mapping in main tester
tree
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commitdiff
2007-01-24
jprocter
kkv change
tree
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commitdiff
2007-01-24
jprocter
Map arbitrary series of non-overlapping integer interva...
tree
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commitdiff
2006-12-21
amwaterhouse
remove unnecessary import
tree
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commitdiff
2006-12-05
amwaterhouse
sequence is char []
tree
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commitdiff
2006-10-24
amwaterhouse
Remove unneccessary import
tree
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commitdiff
2006-10-24
amwaterhouse
Make everything final
tree
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commitdiff
2006-08-22
amwaterhouse
make 1.1 compatible
tree
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commitdiff
2006-08-22
jprocter
hidden region recovery in JPred and new hidden region...
tree
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commitdiff
2006-08-21
amwaterhouse
header updated
tree
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commitdiff
2006-08-21
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-21
jprocter
inverse ShiftList and SequenceI.gapMap->ShiftList methods.
tree
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commitdiff
2006-08-09
jprocter
fixed multiple shifts bug.
tree
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commitdiff
2006-08-07
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-04
jprocter
recover original data for tree and pca as alignment...
tree
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commitdiff
2006-07-26
jprocter
Ignore list created
tree
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commitdiff
2006-07-21
amwaterhouse
DBRefs now array
tree
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commitdiff
2006-07-18
amwaterhouse
Takes strings, not seqs
tree
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commitdiff
2006-07-07
amwaterhouse
Optimised PID method
tree
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commitdiff
2006-06-08
jprocter
Introduced DbRefEntry to DasSourceCoordinateSystem...
tree
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commitdiff
2006-06-07
amwaterhouse
NEW FILES
tree
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commitdiff
2006-03-14
jprocter
methods for searching DBRef lists
tree
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commitdiff
2005-12-22
amwaterhouse
Remove main method
tree
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commitdiff
2005-12-12
amwaterhouse
Check if user cancelled before making image
tree
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commitdiff
2005-12-06
amwaterhouse
after merge
tree
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commitdiff
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
tree
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commitdiff
2005-08-18
jprocter
made changes to DEFAULT_BROWSER in user preferences...
tree
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commitdiff
2005-08-18
jprocter
various case sensitivity bugs fixed in residue comparis...
tree
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commitdiff
2005-08-15
amwaterhouse
isGap slightly more efficient
tree
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commitdiff
2005-08-09
amwaterhouse
Cache.getDefault
tree
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
tree
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commitdiff
2005-06-08
amwaterhouse
Formatted source
tree
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commitdiff
2005-06-08
amwaterhouse
GPL license added
tree
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commitdiff
2005-06-07
jprocter
added a couple of debug statements for unix browser...
tree
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commitdiff
2005-06-05
jprocter
firefox now default for unixen.
tree
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commitdiff
2005-06-03
jprocter
Reinstated 'create tree from selected region only'...
tree
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commitdiff
2005-06-02
jprocter
minor changes to make jalopy happy
tree
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commitdiff
2005-05-31
jprocter
Moved comment so it doesn't break jalopy (this is not...
tree
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commitdiff
2005-05-30
jprocter
comments
tree
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commitdiff
2005-05-27
jprocter
Addred GapChar string for convenient regex construction
tree
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commitdiff
2005-05-25
amwaterhouse
getHexString added
tree
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commitdiff
2005-05-25
jprocter
added jalview.browser property so a linux user can...
tree
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commitdiff
2005-03-23
amwaterhouse
no longer used
tree
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commitdiff
2005-03-08
jprocter
fixed interface for PID method.
tree
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commitdiff
2005-01-24
amwaterhouse
bug in compare fixed
tree
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commitdiff
2004-12-16
amwaterhouse
ilen and jlen no longer +1
tree
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commitdiff
2004-12-15
amwaterhouse
isGap method added to utils
tree
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commitdiff
2004-11-02
amwaterhouse
Jalview Imported Sources
start
tree
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commitdiff