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JAL-3070 JAL-3066 fix initialisation of slivka ServiceWithParameters
[jalview.git]
/
src
/
jalview
/
util
/
2019-08-13
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-06-18
Ben Soares
JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...
tree
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commitdiff
2019-06-12
Ben Soares
JAL-3295 Fixed CMD-select of sequences in alignment...
tree
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commitdiff
2019-06-11
gmungoc
JAL-3187 CDS has same dataset sequence as transcript
tree
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commitdiff
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
tree
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commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
tree
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commitdiff
2019-04-30
gmungoc
JAL-3241 simplified enum constructors for classloadabil...
tree
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commitdiff
2019-04-15
Ben Soares
JAL-3130 Helper classes to take Class Exceptions when...
tree
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commitdiff
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
tree
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commitdiff
2019-03-28
gmungoc
Merge branch 'feature/JAL-3181linkOrdering' into develop
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
tree
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commitdiff
2019-03-04
gmungoc
Merge remote-tracking branch 'origin/tasks/JAL-3035_rem...
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 simplified code and test
tree
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commitdiff
2019-01-03
gmungoc
JAL-3181 order link menu items
tree
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commitdiff
2018-12-13
Ben Soares
JAL-3130 Use non-deprecated check for Mac CMD key press
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-07-18
Jim Procter
Merge branch 'features/mchmmer' into features/mchmmer_m...
features/mchmmer_merge_JAL-1950
tree
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commitdiff
2018-06-05
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-05-31
Jim Procter
Merge branch 'spike/JAL-1950_hmmer3client' into feature...
tree
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commitdiff
2018-05-31
Jim Procter
Merge branch 'develop' into spike/JAL-1950_hmmer3client
tree
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commitdiff
2018-05-29
Mungo Carstairs
JAL-2994 utility method to match a list of folder/file...
tree
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commitdiff
2018-05-28
gmungoc
JAL-2994 use pattern matches to search for chimera.exe
tree
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commitdiff
2018-05-14
gmungoc
JAL-2711 removed unused and flaky utility method
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
tree
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commitdiff
2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
tree
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commitdiff
2018-04-17
Mungo Carstairs
JAL-2937 working Cygwin bash execution of hmmbuild...
tree
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commitdiff
2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2937 extract reusable utility method
tree
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commitdiff
2018-03-30
gmungoc
JAL-2599 MapList from HMM nodes to consensus dataset...
tree
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commitdiff
2018-03-30
gmungoc
JAL-2599 move utility method to MappingUtils
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-02-06
kiramt
Merge branch 'develop' into feature/JAL-2759
feature/JAL-2759
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
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commitdiff
2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
tree
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commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
tree
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commitdiff
2017-11-28
gmungoc
JAL-2850 MapList.isToForwardStrand added
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 update spike to latest
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 don't cache i18n - MessageManager already...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range, Present...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 added conditions Present, NotPresent as options
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL- 2835 support filter on nested attribute keys
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-07
gmungoc
JAL-2808 tweak to use Iterable for set of matchers
tree
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commitdiff
2017-11-06
gmungoc
JAL-2069 cache colours generated from labels
tree
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commitdiff
2017-11-06
gmungoc
JAL-2808 small tweak to getString to quote the pattern...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 toString modified, tests corrected
tree
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commitdiff
2017-10-31
gmungoc
JAL-2808 revised util.matcher package, 2 filter conditi...
tree
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commitdiff
2017-10-31
kiramt
JAL-2756 update for new EBI https link
tree
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commitdiff
2017-10-30
gmungoc
JAL-2808 classes to support filtering by attribute...
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-10-26
gmungoc
JAL-2792 html table for Feature Details report
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2617mappedStopCodon' into develop
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 update spikes/mungo
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 helper method for convolving mappings
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 method to compound / traverse / convolve two...
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-10-02
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update default EBI-eye search URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update default EBI-eye search URL to HTTPS
feature/JAL-2745ebiHttps
tree
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commitdiff
2017-09-27
kiramt
JAL-2674 Removing most calls to getHiddenColumnsCopy
tree
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commitdiff
2017-09-22
gmungoc
JAL-2738 extract utility method to MappingUtils
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 ensure we don’t regress on JAL-20 - we always...
patch/JAL-2732
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 javadoc
tree
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commitdiff
2017-09-01
gmungoc
JAL-2617 omit stop codon from synthesized CDS sequence
tree
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commitdiff
2017-08-30
TZVanaalten
JAL-2616 HMM-Family alignments can now be filtered...
tree
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commitdiff
2017-08-21
Jim Procter
Merge branch 'develop' into trial_merge/JAL-1950
spike/JAL-1950_hmmer3client
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-16
TZVanaalten
JAL-2599 fix background frequency storage and correct...
tree
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commitdiff
2017-08-08
TZVanaalten
JAL-2616 fix allowing clan sorting to work
tree
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commitdiff
2017-07-31
TZVanaalten
JAL-2629 add hmmalign command
tree
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commitdiff
2017-07-25
TZVanaalten
JAL-2616 add ability to perform random alignments withi...
tree
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commitdiff
2017-07-24
tzvanaalten
JAL-2616 add ability to change location of family and...
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-21
TZVanaalten
JAL-2616 add ability to sort Pfam families and HMMs...
tree
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commitdiff
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