git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-3989 Code tidying, added JVL_HEADER for older versions of Jalview, allow time...
[jalview.git]
/
src
/
jalview
/
util
/
2022-03-18
Ben Soares
JAL-3978 New tasks to build archive 'old' dir with...
tree
|
commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
|
commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
|
commitdiff
2022-03-08
Ben Soares
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
tree
|
commitdiff
2022-03-08
Ben Soares
JAL-3103 Put jalview.jar first in getdown for .properti...
tree
|
commitdiff
2022-03-07
Ben Soares
JAL-3103 Switched to (a wrapper around) BrowserLauncher2
tree
|
commitdiff
2022-02-17
Jim Procter
JAL-3691 patch toUpper/toLower to use Locale.ROOT for...
tree
|
commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
|
commitdiff
2022-02-11
Ben Soares
Merge branch 'develop' into update/JAL-3949_abstracted_...
tree
|
commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
|
commitdiff
2022-02-04
Ben Soares
JAL-3949 An attempt at converting to Log4j 2 -- no...
tree
|
commitdiff
2022-02-04
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence_for211...
bug/JAL-3806_without_shared_DS_for_2_11_2
tree
|
commitdiff
2022-02-04
Jim Procter
JAL-3806 require mapping extent covers both sequence...
tree
|
commitdiff
2022-02-03
Jim Procter
JAL-3806 use the covers() test for each selected sequen...
tree
|
commitdiff
2022-02-03
Jim Procter
JAL-3806 use same logic as for mouse over highlighting...
tree
|
commitdiff
2022-02-03
Jim Procter
JAL-3806 todo - problem seems to be Protein:Many CDS...
tree
|
commitdiff
2022-01-28
Jim Procter
Merge branch 'merge/develop_JAL-3725' into develop
tree
|
commitdiff
2022-01-27
Jim Procter
Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
tree
|
commitdiff
2022-01-26
Jim Procter
Merge branch 'task/JAL-3763_newDatasetForCds' into...
tree
|
commitdiff
2022-01-26
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
|
commitdiff
2021-10-01
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
|
commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 refactored GenBank (and EMBL) flat file parser
tree
|
commitdiff
2021-09-16
Jim Procter
JAL-3794 X and N are counted as DNA characters, but...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 more consistent parameter naming
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 helper method reinstated to avoid code duplication
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom/To revised with tests; unused...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 debugged and working (but not tidied) locateIn...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom2 work in progress commit
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3761 failing test, formatting, method renamed
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
|
commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
|
commitdiff
2021-09-15
Jim Procter
Merge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride...
tree
|
commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
|
commitdiff
2021-09-12
Jim Procter
JAL-3829 JalviewJS workarounds/patches
tree
|
commitdiff
2021-07-27
Jim Procter
JAL-3855 convenience method to check a URL will return...
tree
|
commitdiff
2021-03-25
Ben Soares
JAL-3633 refactored/simplified LaunchUtils code
tree
|
commitdiff
2021-03-19
Ben Soares
JAL-3503 Added a Startup tab in Preferences, with gui...
tree
|
commitdiff
2021-03-04
Ben Soares
JAL-3594 Allow a channel to use a different preferences...
tree
|
commitdiff
2021-03-04
Jim Procter
Revert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...
tree
|
commitdiff
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
tree
|
commitdiff
2021-02-04
gmungoc
JAL-3806 fix and test for one-to-many sequence mapping...
bug/JAL-3806_mappingCoversCDS_reprise
tree
|
commitdiff
2020-12-11
Ben Soares
JAL-3594 Adjustments to allow JalviewJS to use ChannelP...
tree
|
commitdiff
2020-12-09
Ben Soares
JAL-3594 Images for splash screen
tree
|
commitdiff
2020-12-09
Ben Soares
JAL-3594 JAL-3728 Added taskbar icons to desktop and...
tree
|
commitdiff
2020-12-08
Ben Soares
Merge branch 'merge/develop_and_rebase_squashed_merge_J...
tree
|
commitdiff
2020-12-07
Ben Soares
JAL-3594 added BG logo. Changed some named Jalviews...
tree
|
commitdiff
2020-12-05
Ben Soares
JAL-3594 Default values for channel properties defined...
tree
|
commitdiff
2020-12-04
Ben Soares
JAL-3594 New jalview.util.ChannelProperties to get...
tree
|
commitdiff
2020-11-12
Ben Soares
JAL-3633 ensure check both or https:// for urls
tree
|
commitdiff
2020-10-29
Jim Procter
Merge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11...
tree
|
commitdiff
2020-10-29
gmungoc
JAL-3700 mapped sequence group includes short (or all...
patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3
tree
|
commitdiff
2020-10-28
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
|
commitdiff
2020-10-28
Jim Procter
JAL-3760 refactor nucleotide proportion test to per...
tree
|
commitdiff
2020-10-22
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
|
commitdiff
2020-10-22
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
|
commitdiff
2020-10-02
Jim Procter
JAL-3762 check for !args || args=="" before overwriting
Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoArg
tree
|
commitdiff
2020-10-02
Jim Procter
JAL-3762 more typo fixing :q
tree
|
commitdiff
2020-10-02
Jim Procter
JAL-3762 syntax error typo
tree
|
commitdiff
2020-10-02
Jim Procter
JAL-3762 check if Info.args already defined before...
tree
|
commitdiff
2020-09-29
Jim Procter
JAL-3760 refactor nucleotide proportion test to per...
tree
|
commitdiff
2020-09-23
Ben Soares
JAL-3633 ensure check both or https:// for urls
tree
|
commitdiff
2020-09-16
gmungoc
JAL-3700 fix for propagation of sort commands
tree
|
commitdiff
2020-09-16
gmungoc
JAL-3700 check for 'covering' mapping when matching...
tree
|
commitdiff
2020-08-12
Jim Procter
Merge branch 'task/JAL-3608_property_set_laf_and_tests...
tree
|
commitdiff
2020-08-05
gmungoc
JAL-3700 fix for propagation of sort commands
tree
|
commitdiff
2020-08-03
gmungoc
JAL-3700 check for 'covering' mapping when matching...
tree
|
commitdiff
2020-08-03
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
|
commitdiff
2020-07-21
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
|
commitdiff
2020-06-16
Ben Soares
JAL-3608 non-JS cherry-pick
tree
|
commitdiff
2020-06-16
Ben Soares
JAL-3608 formatting save only
tree
|
commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
|
commitdiff
2020-05-18
gmungoc
JAL-3613 remove debug code committed in error
tree
|
commitdiff
2020-05-18
gmungoc
JAL-3613 remove debug code committed in error
tree
|
commitdiff
2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
tree
|
commitdiff
2020-04-30
Ben Soares
JAL-3608 Enforcing MetalLookAndFeel as default on linux...
tree
|
commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
|
commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
tree
|
commitdiff
2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
tree
|
commitdiff
2020-04-13
gmungoc
JAL-3574 Matcher with integer/long value pattern (e...
tree
|
commitdiff
2020-04-07
BobHanson
JAL-3589 (old Platform) fix for Jalvew-JS/develop only.
tree
|
commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
|
commitdiff
2020-03-09
gmungoc
JAL-3528 unit tests added for failed lookup, Javadoc
tree
|
commitdiff
2020-02-14
Jim Procter
fix for JAL-3529
tree
|
commitdiff
2020-02-14
Jim Procter
JAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743...
tree
|
commitdiff
2020-02-12
Jim Procter
JAL-1354 JAL-3528 report missing keys for MessageManage...
tree
|
commitdiff
2020-01-28
gmungoc
Merge branch 'feature/JAL-3121gffAttributeMap' into...
tree
|
commitdiff
2019-11-19
gmungoc
JAL-3210 use JSUtil methods getFileBytes, getApplet
tree
|
commitdiff
2019-11-12
gmungoc
JAL-3274 resource path correction, code tidying (consta...
tree
|
commitdiff
2019-11-05
gmungoc
JAL-3120 JAL-3130 can't read "java.specification.versio...
tree
|
commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3263 redo 'Mandarin' character for JS...
tree
|
commitdiff
2019-11-01
Ben Soares
JAL-3474 removed all .cvsignore files stored in the...
improvement/JAL-3474_lots_of_.cvsignore_files
tree
|
commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
|
commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
|
commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
|
commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
|
commitdiff
2019-06-18
Ben Soares
JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...
tree
|
commitdiff
2019-06-12
Ben Soares
JAL-3295 Fixed CMD-select of sequences in alignment...
tree
|
commitdiff
2019-06-11
gmungoc
JAL-3187 CDS has same dataset sequence as transcript
tree
|
commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
|
commitdiff
next