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JAL-2416 remove unused pep, dna alphabets, unused methods, code format
[jalview.git] / src / jalview / util /
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction() tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... tree | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-20 gmungocJAL-2383 check for null, spelling tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 tree | commitdiff
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit... tree | commitdiff
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-16 kiramtJAL-2316 Added database name column to URL links table... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 tree | commitdiff
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes... tree | commitdiff
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose... tree | commitdiff
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download tree | commitdiff
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-15 kiramtJAL-2316 Moved url providers into own package tree | commitdiff
2016-11-15 kiramtJAL-2316 Refactoring of functionality to provide urls... tree | commitdiff
2016-11-14 kiramtUrl links changes - incomplete checkin as battery low tree | commitdiff
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... tree | commitdiff
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... tree | commitdiff
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... tree | commitdiff
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... tree | commitdiff
2016-11-02 kiramtJAL-2282 Code tidy tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-02 kiramtJAL-2282 URLLink unit tests updated tree | commitdiff
2016-11-01 gmungocJAL-98 simplified repeat() method tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... tree | commitdiff
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink tree | commitdiff
2016-10-31 gmungocJAL-98 round when formatting dec places tree | commitdiff
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... tree | commitdiff
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils tree | commitdiff
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282 tree | commitdiff
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-24 kiramtCode tidy up. Unit test passes. tree | commitdiff
2016-10-22 kiramtWorking links menu tree | commitdiff
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file. tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-03 gmungocJAL-2110 javadoc formatting only tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-10-03 gmungocJAL-98 bespoke fast percentage formatter for consensus... tree | commitdiff
2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 formatting tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources... tree | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... tree | commitdiff
2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseIn... tree | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 tree | commitdiff
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe... tree | commitdiff
2016-09-05 gmungocJAL-2154 made Java 7 compatible tree | commitdiff
2016-08-31 gmungocJAL-2077 more javadoc tree | commitdiff
2016-08-30 Jim ProcterJAL-2154 always compare canonicalised DBRefEntry source... tree | commitdiff
2016-08-30 Jim ProcterJAL-2154 simplify expression tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 canonical dbsources are lowercased before... tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 ENA specific Ensembl canonical db prefixes tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR... tree | commitdiff
2016-08-23 Jim ProcterMerge branch 'develop' into bug/JAL-2154projectMappings tree | commitdiff
2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac... tree | commitdiff
2016-08-09 Jim ProcterJAL-2154 test for CDS->protein map tree | commitdiff
2016-08-07 Jim ProcterJAL-2154 add in missing class for createDatasetAlignmen... tree | commitdiff
2016-08-04 Jim ProcterJAL-2154 test for CDS->protein map tree | commitdiff
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi... tree | commitdiff
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 clear message if export is cancelled at 'Rende... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 added an intermediate message between a user... tree | commitdiff
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures tree | commitdiff
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added tree | commitdiff
2016-06-09 gmungocJAL-2110 work in progress tree | commitdiff
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-09 gmungocJAL-2114 corrected Javadoc tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
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