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JAL-1601 Patch JPred4 service tests.
[jalview.git] / src / jalview / util /
2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method. tree | commitdiff
2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_... tree | commitdiff
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -... tree | commitdiff
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch tree | commitdiff
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... tree | commitdiff
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 JAVA_COMPILE_VERSION put into build_properties... tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 New tasks to build archive 'old' dir with... tree | commitdiff
2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... tree | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 tree | commitdiff
2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for... tree | commitdiff
2022-02-15 Mateusz WarownyJAL-3878 Add universal id generator to MathUtils. tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresMerge branch 'develop' into update/JAL-3949_abstracted_... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no... tree | commitdiff
2022-02-04 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2 tree | commitdiff
2022-02-04 Jim ProcterJAL-3806 require mapping extent covers both sequence... tree | commitdiff
2022-02-03 Jim ProcterJAL-3806 use the covers() test for each selected sequen... tree | commitdiff
2022-02-03 Jim ProcterJAL-3806 use same logic as for mouse over highlighting... tree | commitdiff
2022-02-03 Jim ProcterJAL-3806 todo - problem seems to be Protein:Many CDS... tree | commitdiff
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into... tree | commitdiff
2022-01-26 gmungocJAL-3725 helper methods for computing mapped feature... tree | commitdiff
2021-10-01 gmungocJAL-3725 helper methods for computing mapped feature... tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-17 gmungocJAL-1260 refactored GenBank (and EMBL) flat file parser tree | commitdiff
2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but... tree | commitdiff
2021-09-16 gmungocJAL-3761 more consistent parameter naming tree | commitdiff
2021-09-16 gmungocJAL-3761 helper method reinstated to avoid code duplication tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom/To revised with tests; unused... tree | commitdiff
2021-09-16 gmungocJAL-3761 debugged and working (but not tidied) locateIn... tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom2 work in progress commit tree | commitdiff
2021-09-15 gmungocJAL-3761 failing test, formatting, method renamed tree | commitdiff
2021-09-15 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride... tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return... tree | commitdiff
2021-03-25 Ben SoaresJAL-3633 refactored/simplified LaunchUtils code tree | commitdiff
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2021-03-04 Jim ProcterRevert "Merge branch 'bug/JAL-3806_mappingCoversSequenc... tree | commitdiff
2021-02-17 Jim ProcterMerge branch 'feature/JAL-3692enaEndpoint' into patch... tree | commitdiff
2021-02-04 gmungocJAL-3806 fix and test for one-to-many sequence mapping... bug/JAL-3806_mappingCoversCDS_reprise tree | commitdiff
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-10-29 Jim ProcterMerge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11... tree | commitdiff
2020-10-29 gmungocJAL-3700 mapped sequence group includes short (or all... patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3 tree | commitdiff
2020-10-28 gmungocJAL-3725 helper methods for computing mapped feature... tree | commitdiff
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 check for !args || args=="" before overwriting Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoArg tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 more typo fixing :q tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 syntax error typo tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 check if Info.args already defined before... tree | commitdiff
2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-09-16 gmungocJAL-3700 fix for propagation of sort commands tree | commitdiff
2020-09-16 gmungocJAL-3700 check for 'covering' mapping when matching... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-08-05 gmungocJAL-3700 fix for propagation of sort commands tree | commitdiff
2020-08-03 gmungocJAL-3700 check for 'covering' mapping when matching... tree | commitdiff
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... tree | commitdiff
2020-07-21 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... tree | commitdiff
2020-06-30 gmungocJAL-3446 unused imports removed tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-06-16 BobHansonJAL-3446 proper call for headless state tree | commitdiff
2020-06-16 BobHansonJAL-3446 CTRL-DOWN check for headless operation tree | commitdiff
2020-06-12 soaresJAL-3446 fixing a bad merge, sorry tree | commitdiff
2020-06-12 soaresJAL-3446 separated out potential exceptions for simplif... tree | commitdiff
2020-06-12 BobHansonJAL-3446 removing mouse button test debug tree | commitdiff
2020-06-12 BobHansonJAL-3446 from applet -- reload; also fixes some repaint... tree | commitdiff
2020-06-11 BobHansonJAL-3446 no need for SHIFT_DOWN or ALT_DOWN masks tree | commitdiff
2020-06-11 BobHansonFirst try at merging didn't go so well. tree | commitdiff
2020-06-11 BobHansonMerge branch 'Jalview-JS/develop.JAL-3446.ctrlDown... tree | commitdiff
2020-06-07 BobHansonJAL-3446 JavaScript interface tree | commitdiff
2020-06-05 BobHansonJAL-3446 UrlDownloadClient and Test tree | commitdiff
2020-06-05 BobHansonJAL-3446 forgot to escape Java in modified Platform... tree | commitdiff
2020-06-05 BobHansonJAL-3446 new Locale("") moved to Platform for review. tree | commitdiff
2020-06-05 BobHansonJAL-3446 removes all JalviewJSApp dependency from jalvi... tree | commitdiff
2020-06-05 BobHansonRefactoring of Jalview, JalviewAppLoader, JalviewApp... tree | commitdiff
2020-06-03 BobHansonJAL-3664 support for new Locale(""), meaning "not actua... tree | commitdiff
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