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[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

2023-11-03	James Procter	JAL-4090 JAL-1551 spotlessApply	blob \| commitdiff
2023-08-10	Ben Soares	JAL-629 Change all stdout and stderr output to use...	blob \| commitdiff \| diff to current
2023-07-18	James Procter	JAL-3858 annotation .height is bigger than graphHeight...	blob \| commitdiff \| diff to current
2023-05-22	James Procter	JAL-1551 spotless	blob \| commitdiff \| diff to current
2023-05-19	James Procter	JAL-1551 spotlessApply	blob \| commitdiff \| diff to current
2023-05-19	James Procter	JAL-1551 spotlessApply	blob \| commitdiff \| diff to current
2023-02-27	James Procter	JAL-4134 allow tree groups to be stored/recovered on...	blob \| commitdiff \| diff to current
2023-02-13	Ben Soares	Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...	blob \| commitdiff \| diff to current
2023-02-03	James Procter	Merge branch 'develop' into features/r2_11_2_alphafold...	blob \| commitdiff \| diff to current
2023-01-30	Ben Soares	JAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064	blob \| commitdiff \| diff to current
2022-11-01	Ben Soares	JAL-1988 JAL-3772 Change default alignmentviewport...	blob \| commitdiff \| diff to current
2022-09-26	Ben Soares	JAL-1988 JAL-3772 linked undostack to saved changes...	blob \| commitdiff \| diff to current
2022-06-10	Jim Procter	Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2021-08-11	Jim Procter	Merge branch 'features/JAL-2349_matrixvis' into feature...	blob \| commitdiff \| diff to current
2020-09-16	Jim Procter	JAL-3748 store an AlignmentView for the complement...	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...	blob \| commitdiff \| diff to current
2020-08-13	gmungoc	JAL-3597 additional references nulled, bug in test...	blob \| commitdiff \| diff to current
2020-07-14	gmungoc	JAL-3597 additional references nulled, bug in test...	blob \| commitdiff \| diff to current
2019-12-09	gmungoc	JAL-3490 pull up getViewAsVisibleContigs to base class...	blob \| commitdiff \| diff to current
2019-10-08	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2019-06-18	Jim Procter	Merge branch 'features/JAL-2349_matrixvis' into merge...	blob \| commitdiff \| diff to current
2019-06-06	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-04-26	gmungoc	JAL-3226 removal of superseded changes	blob \| commitdiff \| diff to current
2019-04-23	hansonr	[JAL-3226] problem that JavaScript (or Java) may consol...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	Adds check for gap padding to disallow fast paint upon...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	explicit Hashtable objects	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'develop' into merge/JAL-3127	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	JAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-01	gmungoc	Merge branch 'bug/JAL-3158selectionBroadcasts' into...	blob \| commitdiff \| diff to current
2019-02-26	gmungoc	JAL-3201 group colour schemes distinct instances	blob \| commitdiff \| diff to current
2019-02-18	gmungoc	JAL-3187 'on top' optional for complementary features	blob \| commitdiff \| diff to current
2019-01-18	gmungoc	JAL-3187 basic first version for tooltips only (renderi...	blob \| commitdiff \| diff to current
2018-11-28	gmungoc	JAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	JAL-3127 use AlignViewportI.addGroup() to add group...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	viewport flag to indicate when structure view needs...	blob \| commitdiff \| diff to current
2018-07-20	gmungoc	JAL-3048 revised AlignExportSettings dialog with respon...	blob \| commitdiff \| diff to current
2018-02-27	Jim Procter	Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104	blob \| commitdiff \| diff to current
2018-02-09	gmungoc	JAL-2666 fix failure to scroll split alignment of height 1	blob \| commitdiff \| diff to current
2018-01-19	kiramt	JAL-2759 Changes to getVisibleSequenceStrings after...	blob \| commitdiff \| diff to current
2018-01-16	kiramt	JAL-2759 Moved alignment annotation code out of HiddenC...	blob \| commitdiff \| diff to current
2018-01-15	kiramt	JAL-2759 Rename findColumnPosition and adjustForHiddenC...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-26	Jim Procter	JAL-2488 patch causes of NPE during testStoreAndRecover...	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-11	kiramt	JAL-2742 removed unused getViewAsCigars	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-14	gmungoc	JAL-2727 null more fields in AlignmentViewport.dispose...	blob \| commitdiff \| diff to current
2017-09-13	gmungoc	JAL-2727 null additional references on close	blob \| commitdiff \| diff to current
2017-09-12	gmungoc	Revert "JAL-2727 null hconsensus, "	blob \| commitdiff \| diff to current
2017-09-12	gmungoc	JAL-2727 null hconsensus,	blob \| commitdiff \| diff to current
2017-09-12	gmungoc	JAL-2727 ensure ViewportRanges (and gapcounts) are...	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-08-08	gmungoc	JAL-2560 alternative fix (reinstate lost line of code)	blob \| commitdiff \| diff to current
2017-08-08	gmungoc	JAL-2649 JAL-2650 wait for Conservation calc to complet...	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-07-06	gmungoc	JAL-147 unit test for hide/show sequences update Viewpo...	blob \| commitdiff \| diff to current
2017-07-05	Jim Procter	Merge branch 'develop' into features/JAL-2349_matrixvis	blob \| commitdiff \| diff to current
2017-07-04	gmungoc	JAL-147 revised update of startSeq, endSeq on unhide...	blob \| commitdiff \| diff to current
2017-07-04	gmungoc	JAL-147 corrected update of ViewportRanges for show...	blob \| commitdiff \| diff to current
2017-07-04	gmungoc	JAL-147 update ViewportRanges height after show/hide...	blob \| commitdiff \| diff to current
2017-07-03	gmungoc	Merge branch 'develop' into bug/JAL-147scrollWrappedView	blob \| commitdiff \| diff to current
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-09	Jim Procter	Merge branch 'develop' into features/JAL-2349_matrixvis	blob \| commitdiff \| diff to current
2017-06-06	kiramt	JAL-2591 Removed getHiddenRegions()==null checks which...	blob \| commitdiff \| diff to current
2017-05-24	kiramt	JAL-2034 Added isDefined flag to SequenceGroup	blob \| commitdiff \| diff to current
2017-05-15	Jim Procter	JAL-2371 create a default ResidueShader when constructi...	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2435splitScreenFont' into...	blob \| commitdiff \| diff to current
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-05-03	Jim Procter	JAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 consensus calculation doesn’t depend on occupa...	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 only create and add occupancy row to alignment...	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 occupancy row has a space below it for counts	blob \| commitdiff \| diff to current
2017-04-24	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Finished split of hidden columns and selected...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-04-19	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-04-03	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-03-31	gmungoc	Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView	blob \| commitdiff \| diff to current
2017-03-31	gmungoc	JAL-2435 slightly more sensible behaviour changing...	blob \| commitdiff \| diff to current
2017-03-22	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-03-21	kiramt	JAL-2388 Made ViewportRanges final	blob \| commitdiff \| diff to current
2017-03-21	Jim Procter	Merge branch 'features/JAL-2388OverviewWindow' into...	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Renamed viewport position props to viewport...	blob \| commitdiff \| diff to current
2017-03-15	gmungoc	JAL-2431 show cDNA consensus after New View in split...	blob \| commitdiff \| diff to current
2017-03-15	kiramt	JAL-2388 Unit tests and tidies	blob \| commitdiff \| diff to current
2017-03-01	kiramt	JAL-2388 Reverted to previous	blob \| commitdiff \| diff to current
2017-03-01	gmungoc	Merge branch 'features/JAL-2295setChimeraAttributes...	blob \| commitdiff \| diff to current
2017-03-01	kiramt	JAL-2388 Preliminary refactor check-in, does not compile	blob \| commitdiff \| diff to current
2017-02-28	kiramt	JAL-2388 First move of endRes etc out of AlignmentViewp...	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
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