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Merge branch 'bug/JAL-3807_jpred-with-slivka' into alpha/JAL-3066_Jalview_212_slivka...
[jalview.git]
/
src
/
jalview
/
viewmodel
/
2017-11-23
gmungoc
JAL-2808 pass FeatureSettings to controller as array...
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-22
gmungoc
JAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-15
gmungoc
JAL-2816 exclude filtered / thresholded out features...
tree
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commitdiff
2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 code tidy (generic type constructors)
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidies and tests
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidy
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
tree
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commitdiff
2017-11-07
kiramt
JAL-2774 Added javadoc for new event parameters
imp/JAL-2774
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 add 'by attribute' options to graduated featur...
tree
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commitdiff
2017-11-07
gmungoc
JAL-2816 tweaks to feature visibility checks
tree
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commitdiff
2017-11-03
kiramt
JAL-2778 Reduced calculation load for overview box
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 feature filters held on FeatureRenderer, getCo...
tree
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commitdiff
2017-10-31
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
Jim Procter
JAL-2488 patch causes of NPE during testStoreAndRecover...
tree
|
commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2667mouseWheelWrapped' into develop
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2727closeAllFreeMemory' into...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-13
kiramt
JAL-2774 Created single event for update to both start...
tree
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commitdiff
2017-10-11
kiramt
JAL-2742 removed unused getViewAsCigars
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-14
gmungoc
JAL-2727 null more fields in AlignmentViewport.dispose...
tree
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commitdiff
2017-09-13
gmungoc
JAL-2727 null additional references on close
tree
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commitdiff
2017-09-12
gmungoc
Revert "JAL-2727 null hconsensus, "
tree
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commitdiff
2017-09-12
gmungoc
JAL-2727 null hconsensus,
tree
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commitdiff
2017-09-12
gmungoc
JAL-2727 ensure ViewportRanges (and gapcounts) are...
tree
|
commitdiff
2017-09-01
TZVanaalten
JAL-2629 manual curation of HMMs via reference annotati...
tree
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commitdiff
2017-08-28
tzvanaalten
JAL-2629 add option to set HMM Logo letter height to...
tree
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commitdiff
2017-08-25
TZVanaalten
JAL-2629 add adjustable parameters to hmmbuild
tree
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commitdiff
2017-08-25
TZVanaalten
JAL-2629 fix for NPE caused by incorrect initiation...
tree
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commitdiff
2017-08-25
TZVanaalten
JAL-2629 add basic parameter adjustment to hmmsearch...
tree
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commitdiff
2017-08-23
gmungoc
JAL-2667 tests added, update status bar and tooltip
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-17
TZVanaalten
JAL-2629 add documentation to previous work
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-15
TZVanaalten
JAL-2629 selected HMM name now shown in HMMER menu
tree
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commitdiff
2017-08-11
TZVanaalten
JAL-2629 add ability to select HMMs
tree
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commitdiff
2017-08-10
TZVanaalten
JAL-2629 hmmalign now correctly creates a new frame
tree
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commitdiff
2017-08-10
gmungoc
JAL-2593 don't filter out 'colour by label' features
tree
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commitdiff
2017-08-09
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-08
gmungoc
JAL-2560 alternative fix (reinstate lost line of code)
tree
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commitdiff
2017-08-08
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-08
gmungoc
JAL-2649 JAL-2650 wait for Conservation calc to complet...
tree
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commitdiff
2017-08-07
TZVanaalten
JAL-2629 current hmmer commands are now executed in...
tree
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commitdiff
2017-08-04
TZVanaalten
JAL-2629 multiple HMMs can now be dropped onto an alignment
tree
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commitdiff
2017-08-02
TZVanaalten
JAL-2599 fix for information annotation buttons
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-01
gmungoc
JAL-2611 reinstate missed merge - again!
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'feature/JAL-2611' into develop
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-23
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-22
gmungoc
JAL-2624 check feature colour threshold when colouring...
tree
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commitdiff
2017-07-22
kiramt
Merge branch 'develop' into feature/JAL-2611
tree
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commitdiff
2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-18
kiramt
JAL-2611 Tidies, initial unit tests
tree
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commitdiff
2017-07-18
gmungoc
JAL-147 corrected calculation of vertical scroll positi...
tree
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commitdiff
2017-07-18
kiramt
JAL-2611 Better
tree
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commitdiff
2017-07-17
kiramt
JAL-2611 Still not happy with behaviour
tree
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commitdiff
2017-07-14
TZVanaalten
add partial button fix to annotation and statistics...
features/hmmer_statistics
tree
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commitdiff
2017-07-14
kiramt
JAL-2611 First pass, not thrilled with hidden column...
tree
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commitdiff
2017-07-14
kiramt
Merge branch 'feature/JAL-2613' into feature/JAL-2611
tree
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commitdiff
2017-07-14
kiramt
JAL-2611 Pre-merge checkin
tree
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commitdiff
2017-07-13
kiramt
JAL-2611 Added overview dimensions test for position...
tree
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commitdiff
2017-07-13
kiramt
JAL-2613 Unit tests and a fix. Phew.
tree
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commitdiff
2017-07-12
kiramt
JAL-2613 Centre alignment at click point
tree
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commitdiff
2017-07-12
TZVanaalten
test HMM annotaTION
tree
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commitdiff
2017-07-06
gmungoc
JAL-1858 scrollToWrappedVisible preserve any horizontal...
tree
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commitdiff
2017-07-06
gmungoc
JAL-147 prevent vertical Overview box movement in wrapp...
tree
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commitdiff
2017-07-06
gmungoc
JAL-147 unit test for hide/show sequences update Viewpo...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 revised update of startSeq, endSeq on unhide...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 unit tests added, unused setEndRes removed
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 corrected update of ViewportRanges for show...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 update ViewportRanges height after show/hide...
tree
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commitdiff
2017-07-04
gmungoc
JAL-147 extract local variable for ease of debugging
tree
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commitdiff
2017-07-03
gmungoc
Merge branch 'develop' into bug/JAL-147scrollWrappedView
tree
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commitdiff
2017-07-03
gmungoc
JAL-147 don't scroll Overview box outside panel dimensions
tree
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commitdiff
2017-07-03
gmungoc
JAL-147 ViewportRanges calculate wrapped vertical scrol...
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-30
gmungoc
JAL-147 don't page up above origin, repaint ids for...
tree
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commitdiff
2017-06-30
gmungoc
JAL-2602 pulled up identical methods to base class
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-29
gmungoc
JAL-147 improved wrapped scrolling (including Overview...
tree
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commitdiff
2017-06-29
TZVanaalten
transferred the storage position of the HMM to annotations
tree
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commitdiff
2017-06-28
kiramt
JAL-2600 updates following review
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-09
gmungoc
JAL-2593 avoid redundant rendering of co-located features
tree
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commitdiff
next