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JAL-3070 use ArgumentI in all public constructors, convert to service specific argume...
[jalview.git] / src / jalview / viewmodel /
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... tree | commitdiff
2018-03-30 gmungocJAL-2939 field/method naming more consistent tree | commitdiff
2018-03-30 gmungocJAL-2939 remove commented out code tree | commitdiff
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo tree | commitdiff
2018-03-26 gmungocJAL-2939 no need to recalc HMM annotation for show... tree | commitdiff
2018-03-21 gmungocJAL-2629 tweaks to Information annotation updating tree | commitdiff
2018-03-16 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... tree | commitdiff
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip) tree | commitdiff
2018-02-28 gmungocJAL-2629 some tidying of Hmmer commands (wip) tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... tree | commitdiff
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc tree | commitdiff
2018-02-21 Jim ProcterMerge branch 'bug/JAL-2778again' into releases/Release_... tree | commitdiff
2018-02-20 gmungocJAL-2629 removed SequenceI.get/setLastPosition and... tree | commitdiff
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1 tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims tree | commitdiff
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... tree | commitdiff
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... tree | commitdiff
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor() tree | commitdiff
2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... tree | commitdiff
2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array... tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters... tree | commitdiff
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837 tree | commitdiff
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features... tree | commitdiff
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at... tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL-2835 code tidy (generic type constructors) tree | commitdiff
2017-11-14 kiramtJAL-2831 tidies and tests tree | commitdiff
2017-11-14 kiramtJAL-2831 tidy tree | commitdiff
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode tree | commitdiff
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor... tree | commitdiff
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor... tree | commitdiff
2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters imp/JAL-2774 tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-07 gmungocJAL-2069 add 'by attribute' options to graduated featur... tree | commitdiff
2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks tree | commitdiff
2017-11-03 kiramtJAL-2778 Reduced calculation load for overview box tree | commitdiff
2017-11-02 gmungocJAL-2808 spike updated with latest tree | commitdiff
2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getCo... tree | commitdiff
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-13 kiramtJAL-2774 Created single event for update to both start... tree | commitdiff
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose... tree | commitdiff
2017-09-13 gmungocJAL-2727 null additional references on close tree | commitdiff
2017-09-12 gmungocRevert "JAL-2727 null hconsensus, " tree | commitdiff
2017-09-12 gmungocJAL-2727 null hconsensus, tree | commitdiff
2017-09-12 gmungocJAL-2727 ensure ViewportRanges (and gapcounts) are... tree | commitdiff
2017-09-01 TZVanaaltenJAL-2629 manual curation of HMMs via reference annotati... tree | commitdiff
2017-08-28 tzvanaaltenJAL-2629 add option to set HMM Logo letter height to... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 add adjustable parameters to hmmbuild tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 fix for NPE caused by incorrect initiation... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 add basic parameter adjustment to hmmsearch... tree | commitdiff
2017-08-23 gmungocJAL-2667 tests added, update status bar and tooltip tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer tree | commitdiff
2017-08-17 TZVanaaltenJAL-2629 add documentation to previous work tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 selected HMM name now shown in HMMER menu tree | commitdiff
2017-08-11 TZVanaaltenJAL-2629 add ability to select HMMs tree | commitdiff
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame tree | commitdiff
2017-08-10 gmungocJAL-2593 don't filter out 'colour by label' features tree | commitdiff
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code) tree | commitdiff
2017-08-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complet... tree | commitdiff
2017-08-07 TZVanaaltenJAL-2629 current hmmer commands are now executed in... tree | commitdiff
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-01 gmungocJAL-2611 reinstate missed merge - again! tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop tree | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 tree | commitdiff
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring... tree | commitdiff
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611 tree | commitdiff
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-18 kiramtJAL-2611 Tidies, initial unit tests tree | commitdiff
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