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Merge branch 'develop' into bug/JAL-4421_customise_volume_name_of_DMG_installers
[jalview.git] / src / jalview / viewmodel /
2024-05-21 Jim ProcterJAL-4159 connectivity should be computed for the sequen... tree | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4159_pasimap tree | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4386_calculate_... tree | commitdiff
2024-05-15 Renia CorreyaJAL-4386 Added preferences for secondary structure... tree | commitdiff
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... tree | commitdiff
2024-04-30 Renia CorreyaJAL-4392 Merging consensus secondary structure tree | commitdiff
2024-04-18 MorellThomasMerge branch 'test/progressBar' into feature/JAL-4159_p... tree | commitdiff
2024-04-18 MorellThomasImplemented ProgressBar for PaSiMap tree | commitdiff
2024-03-15 MorellThomasFix output of all dimensions tree | commitdiff
2024-01-31 MorellThomasFix output points column labels tree | commitdiff
2023-12-05 MorellThomasAdapts PCA points to support rectangular selection tree | commitdiff
2023-12-04 MorellThomasNew GPCAPanel button : output pairwise alignments ... tree | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-10-01 MorellThomasFix Reset Button for PaSiMap and issue with indelfreeAs... tree | commitdiff
2023-09-18 MorellThomasFix buttons on the PaSiMap plot window tree | commitdiff
2023-09-16 MorellThomasAlmost working tree | commitdiff
2023-09-07 MorellThomasMerge branch 'hardcode' tree | commitdiff
2023-09-07 MorellThomasImplemented least-squares optimisation in ccAnalysis tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-08-02 Ben SoaresJAL-244 Fix buglet with automatic change in id column... tree | commitdiff
2023-07-22 MorellThomasImplement MSA, scoring and counting the connections tree | commitdiff
2023-07-18 James ProcterJAL-3858 annotation .height is bigger than graphHeight... tree | commitdiff
2023-07-09 MorellThomasCopied PCA files to PaSiMap analogues and changed all... tree | commitdiff
2023-05-22 James ProcterJAL-1551 spotless tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-02-27 James ProcterJAL-4134 allow tree groups to be stored/recovered on... tree | commitdiff
2023-02-20 Ben SoaresJAL-4128 Catch RasterFormatException caused whilst... bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception tree | commitdiff
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064 tree | commitdiff
2022-11-01 Ben SoaresJAL-1988 JAL-3772 Change default alignmentviewport... tree | commitdiff
2022-09-26 Ben SoaresJAL-1988 JAL-3772 linked undostack to saved changes... tree | commitdiff
2022-09-16 Jim ProcterJAL-518 refactored groovy script into main codebase... tree | commitdiff
2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-02-16 Jim ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into... tree | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2021-08-11 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into feature... tree | commitdiff
2020-10-22 gmungocJAL-3763 refactored getCoveringMapping for virtual... tree | commitdiff
2020-10-08 gmungocJAL-3763 refactored getCoveringMapping for virtual... tree | commitdiff
2020-09-16 Jim ProcterJAL-3748 store an AlignmentView for the complement... tree | commitdiff
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL... tree | commitdiff
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test... tree | commitdiff
2020-07-31 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... tree | commitdiff
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test... tree | commitdiff
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into... tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-04-21 Jim ProcterJAL-367 code tidy tree | commitdiff
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... tree | commitdiff
2020-04-07 gmungocJAL-3210 fudge for JalviewJS to avoid IntervalStore... tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-06 gmungocJAL-3187 unit test for findComplementFeaturesAtResidue tree | commitdiff
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2019-12-09 gmungocJAL-3490 pull up getViewAsVisibleContigs to base class... tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into merge... tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-04-26 gmungocJAL-3226 removal of superseded changes tree | commitdiff
2019-04-23 hansonr[JAL-3226] problem that JavaScript (or Java) may consol... tree | commitdiff
2019-04-18 hansonrAdds check for gap padding to disallow fast paint upon... tree | commitdiff
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() tree | commitdiff
2019-04-18 hansonrexplicit Hashtable objects tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 tree | commitdiff
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... tree | commitdiff
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances tree | commitdiff
2019-02-21 gmungocJAL-3187 handle no mapping / complement features withou... tree | commitdiff
2019-02-19 gmungocJAL-3187 hacks to get peptide variant in to Jmol hover... tree | commitdiff
2019-02-18 gmungocJAL-3187 reset ViewStyle on Cancel in FeatureSettings tree | commitdiff
2019-02-18 gmungocJAL-3187 'on top' optional for complementary features tree | commitdiff
2019-01-22 gmungocJAL-3187 clunky sort by renderorder in findComplementFe... tree | commitdiff
2019-01-21 gmungocJAL-3187 unit tests updated and errors caught tree | commitdiff
2019-01-21 gmungocJAL-3187 findFeaturesAtResidue answer in render order... tree | commitdiff
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct... tree | commitdiff
2019-01-18 gmungocJAL-3187 basic first version for tooltips only (renderi... tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... tree | commitdiff
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... tree | commitdiff
2018-09-27 gmungocJAL-2791 method that tests all conditions for feature... tree | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth tree | commitdiff
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... tree | commitdiff
2018-07-09 gmungocJAL-3060 extract FeatureEditor class task/JAL-3060featureEditor tree | commitdiff
2018-05-07 gmungocJAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded... tree | commitdiff
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of... tree | commitdiff
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