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JAL-2416 remove unused pep, dna alphabets, unused methods, code format
[jalview.git] / src / jalview / viewmodel /
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... tree | commitdiff
2017-02-10 gmungocJAL-2371 small move of code, typo correction tree | commitdiff
2017-02-09 gmungocJAL-2405 set initial selection group alignment context tree | commitdiff
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... tree | commitdiff
2017-01-31 gmungocJAL-2371 commented code removed only tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... tree | commitdiff
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... tree | commitdiff
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop tree | commitdiff
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing... tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-09-22 gmungocJAL-2216 new dispose() method to null references tree | commitdiff
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not... tree | commitdiff
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... tree | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 tree | commitdiff
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe... tree | commitdiff
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch... tree | commitdiff
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method... tree | commitdiff
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-14 Jim Procterfix for JAL-2147 tree | commitdiff
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping tree | commitdiff
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation tree | commitdiff
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove... tree | commitdiff
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen... tree | commitdiff
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... tree | commitdiff
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... tree | commitdiff
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset tree | commitdiff
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 fix for broken tests tree | commitdiff
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequenc... tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting... tree | commitdiff
2015-09-03 Jim ProcterJAL-1551 source tidy tree | commitdiff
2015-08-17 gmungocJAL-1691 scan full width and depth of alignment for... tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-10 tcofoegbuJAL-1641 updated applet version tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... tree | commitdiff
2015-04-29 gmungocJAL-1686 ViewStyle.hashCode implemented tree | commitdiff
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... tree | commitdiff
2015-04-27 gmungocJAL-1691 more stable linked scrolling across split... tree | commitdiff
2015-04-13 gmungocJAL-1690 show 'scale protein' in protein _and_ dna... tree | commitdiff
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... tree | commitdiff
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences... tree | commitdiff
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method tree | commitdiff
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