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JAL-3070 formatting
[jalview.git] / src / jalview / viewmodel /
2019-08-13 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into... tree | commitdiff
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-03 tvaJAL-2629 can now filter by sequence e-value or bit... tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-06-05 tvaJAL-3285 delete duplicate variables in AlignmentViewpor... tree | commitdiff
2019-06-05 tvaJAL-3285 add unmerged features into AlignmentViewport tree | commitdiff
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 tree | commitdiff
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... tree | commitdiff
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances tree | commitdiff
2019-02-21 gmungocJAL-3187 handle no mapping / complement features withou... tree | commitdiff
2019-02-19 gmungocJAL-3187 hacks to get peptide variant in to Jmol hover... tree | commitdiff
2019-02-18 gmungocJAL-3187 reset ViewStyle on Cancel in FeatureSettings tree | commitdiff
2019-02-18 gmungocJAL-3187 'on top' optional for complementary features tree | commitdiff
2019-01-22 gmungocJAL-3187 clunky sort by renderorder in findComplementFe... tree | commitdiff
2019-01-21 gmungocJAL-3187 unit tests updated and errors caught tree | commitdiff
2019-01-21 gmungocJAL-3187 findFeaturesAtResidue answer in render order... tree | commitdiff
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct... tree | commitdiff
2019-01-18 gmungocJAL-3187 basic first version for tooltips only (renderi... tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... tree | commitdiff
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... tree | commitdiff
2018-09-27 gmungocJAL-2791 method that tests all conditions for feature... tree | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth tree | commitdiff
2018-06-01 Jim ProcterJAL-1950 JAL-2937 allow copy of sequences from group... tree | commitdiff
2018-05-07 gmungocJAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded... tree | commitdiff
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of... tree | commitdiff
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas... tree | commitdiff
2018-04-26 gmungocJAL-2962 rename run method (as not a Runnable) tree | commitdiff
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional... tree | commitdiff
2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes tree | commitdiff
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... tree | commitdiff
2018-03-30 gmungocJAL-2939 field/method naming more consistent tree | commitdiff
2018-03-30 gmungocJAL-2939 remove commented out code tree | commitdiff
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo tree | commitdiff
2018-03-26 gmungocJAL-2939 no need to recalc HMM annotation for show... tree | commitdiff
2018-03-21 gmungocJAL-2629 tweaks to Information annotation updating tree | commitdiff
2018-03-16 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... tree | commitdiff
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip) tree | commitdiff
2018-02-28 gmungocJAL-2629 some tidying of Hmmer commands (wip) tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... tree | commitdiff
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc tree | commitdiff
2018-02-21 Jim ProcterMerge branch 'bug/JAL-2778again' into releases/Release_... tree | commitdiff
2018-02-20 gmungocJAL-2629 removed SequenceI.get/setLastPosition and... tree | commitdiff
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1 tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims tree | commitdiff
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... tree | commitdiff
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... tree | commitdiff
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor() tree | commitdiff
2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... tree | commitdiff
2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array... tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters... tree | commitdiff
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837 tree | commitdiff
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features... tree | commitdiff
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at... tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL-2835 code tidy (generic type constructors) tree | commitdiff
2017-11-14 kiramtJAL-2831 tidies and tests tree | commitdiff
2017-11-14 kiramtJAL-2831 tidy tree | commitdiff
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode tree | commitdiff
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor... tree | commitdiff
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor... tree | commitdiff
2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters imp/JAL-2774 tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-07 gmungocJAL-2069 add 'by attribute' options to graduated featur... tree | commitdiff
2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks tree | commitdiff
2017-11-03 kiramtJAL-2778 Reduced calculation load for overview box tree | commitdiff
2017-11-02 gmungocJAL-2808 spike updated with latest tree | commitdiff
2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getCo... tree | commitdiff
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
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