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JAL-4159 connectivity should be computed for the sequences analysed with PAsiMap...
[jalview.git]
/
src
/
jalview
/
ws
/
datamodel
/
2023-11-13
James Procter
JAL-4090 JAL-1551 source license
tree
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-08-31
James Procter
JAL-4124 MappableContactMatrix equivalence and hashCode...
tree
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commitdiff
2023-08-29
James Procter
JAL-4124 decouple mappable contact matrix mapping logic...
tree
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commitdiff
2023-07-18
James Procter
JAL-3855 PAE matrices are transposed on import from...
tree
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commitdiff
2023-06-01
James Procter
JAL-4134 properly resolve positions in associated align...
features/JAL-4134_use_annotation_row_for_colours_and_groups
tree
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commitdiff
2023-05-29
James Procter
JAL-4134 JAL-2349 test & fixed implementation(ish)...
tree
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commitdiff
2023-05-22
James Procter
JAL-4134 only build tree when showing it in the tree...
tree
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commitdiff
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-18
James Procter
JAL-4134 support recovery of mapped positions for raw...
tree
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commitdiff
2023-05-18
James Procter
JAL-4134 column grouping model and methods moved to...
tree
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commitdiff
2023-05-18
James Procter
JAL-4134 formatting
tree
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commitdiff
2023-05-14
James Procter
JAL-2349 fix up tests for Java 11 compatibility and...
tree
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commitdiff
2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
tree
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commitdiff
2023-05-12
James Procter
JAL-2349 allow PAE or other contact matrices to hold...
tree
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commitdiff
2023-05-01
James Procter
JAL-3858 report errors when trying to parse JSON to...
tree
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commitdiff
2023-04-12
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-03-24
James Procter
JAL-4158 first attempt at stashing colours for contact...
tree
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commitdiff
2023-03-20
James Procter
JAL-4134 override default hasTree so PAE tree is saved!
tree
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commitdiff
2023-03-17
James Procter
JAL-4134 store/restore Newick tree for PAE annotation row
tree
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commitdiff
2023-03-15
James Procter
JAL-4091 JAL-629 ‘Add Reference Annotations’ takes...
tree
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commitdiff
2023-03-15
James Procter
JAL-4134 JAL-3855 store/restore groups, tree and thresh...
tree
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commitdiff
2023-03-09
Ben Soares
JAL-629 --argfile=glob implemented. Remove reference...
tree
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commitdiff
2023-03-08
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
tree
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commitdiff
2023-03-06
Ben Soares
JAL-629 Fix null AlignPanel. More descriptive label...
tree
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commitdiff
2023-02-27
James Procter
JAL-4134 allow tree groups to be stored/recovered on...
tree
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commitdiff
2023-02-24
James Procter
JAL-629 JAL-4124 JAL-3855 test to check we can import...
tree
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commitdiff
2023-02-24
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
features/JAL-3858_PAEsInProjects
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 fix a PAEMatrix casting error
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 persist PAE matrix (only so far) as serialised...
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 construct a PAE direct from float array
tree
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commitdiff
2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
tree
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commitdiff
2023-02-03
Ben Soares
JAL-629 Fasta sequence id reading whitespace fix. Flexi...
tree
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commitdiff
2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
tree
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commitdiff
2022-10-28
Jim Procter
JAL-2349 allow contact matrix to provide labels for...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 ContactListI.getPosition() to recover...
tree
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commitdiff
2022-10-17
Jim Procter
JAL-3855 bump AF version to 3 - keep contact renderer...
tree
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commitdiff
2022-10-15
Jim Procter
JAL-3855 pAE v2 import
tree
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commitdiff
2022-06-24
Jim Procter
JAL-2349 JAL-3855 resolve sequence position for contact...
tree
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commitdiff
2021-08-20
Jim Procter
JAL-3855 JAL-2349 (d0h) class for holding and accessing...
tree
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commitdiff