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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
ws
/
sifts
/
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2023-07-17
James Procter
JAL-4119 TRACE level console message reporting download...
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 use split_xml directories rather than the...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2020-11-06
Ben Soares
JAL-3628 Changed other calls to renameTo to use BackupF...
tree
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commitdiff
2020-06-15
Ben Soares
JAL-3628 Changed other calls to renameTo to use BackupF...
tree
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commitdiff
2020-05-19
gmungoc
JAL-3624 use temp file for SIFT download in JS, correct...
feature/JAL-3624siftsInJS
tree
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commitdiff
2018-08-21
hansonr
mc_view references were MCview
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 don’t create a mapping if sequence...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 only create a mapping entry or write...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 JAL-2780 include sequence start number when...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 use PDBe numbering to map between...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 include a Mapping object in Structure...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 UNASSIGNED positions marked as Intege...
tree
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commitdiff
2018-02-09
Jim Procter
Use the “PDBe” or “PDB” numbering (starts from 1, corre...
tree
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commitdiff
2018-02-09
Jim Procter
JAL-2780 JAL-2781 should always ensure SIFTS mappings...
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-02
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2482 bug fix
tree
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commitdiff
2017-04-21
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-19
tcofoegbu
JAL-2482 added null check
tree
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commitdiff
2017-04-18
tcofoegbu
JAL-2482 Bugfix
tree
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commitdiff
2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-02-20
gmungoc
JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
tree
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commitdiff
2017-02-18
gmungoc
JAL-2416 better encapsulated 'constants' for BLOSUM62...
tree
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commitdiff
2017-02-17
gmungoc
JAL-2416 removed DNA and PAM250 matrices from ResiduePr...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2356 enhanced unit test to verify reuse (or not...
tree
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commitdiff
2016-12-08
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-12-07
gmungoc
JAL-2356 use cached Sifts file if not expired
tree
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commitdiff
2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
tree
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commitdiff
2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
tree
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commitdiff
2016-11-08
tcofoegbu
JAL-2292 updated method calls
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 fix for wrong mapping output in sequence mappi...
tree
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commitdiff
2016-11-03
tcofoegbu
JAL-2312 Bug fix for repeated mapping generation from...
tree
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commitdiff
2016-10-13
gmungoc
JAL-1479 revise warning message to suit all contexts
bug/JAL-2044jmolModelBinding
tree
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commitdiff
2016-10-11
gmungoc
JAL-1479 small tidy of error message when Sifts mapping...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-09-06
gmungoc
JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-1926 JAL-2106 source DB refs come from SequenceI...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-1926 JAL-2106 resolve source DB refs using canonica...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
tree
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commitdiff
2016-06-29
tcofoegbu
JAL-1479 improved Sifts PID calculation for determining...
tree
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commitdiff
2016-06-28
tcofoegbu
JAL-1479 minor refactor and housekeeping
tree
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commitdiff
2016-06-28
tcofoegbu
JAL-1479 improved SiftsClient test coverage and impleme...
tree
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commitdiff
2016-06-10
tcofoegbu
JAL-1479 updated SIFTS FTP download URL, added improvem...
tree
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commitdiff
2016-06-08
tcofoegbu
JAL-1479 JAL- Fix to eradicate duplicate mapping output...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1479 Commented out debug sysout's for SiftsClient
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
2016-03-03
tcofoegbu
JAL-1919 updated unicode mapping symbol
tree
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commitdiff
2016-03-03
tcofoegbu
JAL-1919 updated unicode symbol for mapping
tree
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
tree
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commitdiff
2016-02-19
tcofoegbu
JAL-2009 Codes to enable storing inserted residues...
tree
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commitdiff
2016-01-27
tcofoegbu
JAL-1479 fixed off-by-one error in SIFTS mapping output...
tree
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commitdiff
2016-01-26
tcofoegbu
develop merge
tree
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commitdiff
2016-01-26
tcofoegbu
JAL-1999 JAL-1479 implemented configurable fail-safe...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1479 JAL-1979 bugfix to check entire annotation...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1479 JAL-1979 updated the modified-aminoacid triple...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2016-01-07
tcofoegbu
JAL-1479 implemented timestamp based caching of SIFTS...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 refactored DBRef fetching code to StructureCho...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 applet build debug
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
tree
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commitdiff
2015-11-23
tcofoegbu
JAL-1479 commented out DBRef fetching code from SIFTS...
tree
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commitdiff
2015-11-17
tcofoegbu
JAL-1479 Refactored Sifts configuration preference...
tree
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commitdiff
2015-11-16
tcofoegbu
JAL-1967 JAL-1479 refactored sequence<->structure mappi...
tree
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commitdiff
2015-11-13
tcofoegbu
JAL-1479 added transfer of residue annotation for SIFTS...
tree
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commitdiff
2015-11-11
tcofoegbu
JAL-1957 JAL-1479 Further optimisation of SIFTs Client...
features/JAL-1479_SIFTS-mapping
tree
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commitdiff
2015-11-05
tcofoegbu
JAL-1479 SiftClient house keeping
tree
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commitdiff
2015-10-29
tcofoegbu
JAL-1926 JAL-1479 updated PDBfile fetcher to add source...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1479 added support for SIFTs mapping output viewing...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1887 JAL-1479 bugfix for incorrect start/end for...
tree
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commitdiff