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(JAL-961) more calculation annotation and result object getters
[jalview.git]
/
src
/
jalview
/
ws
/
2010-05-21
jprocter
preset and argument support
tree
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commitdiff
2010-05-21
jprocter
comment about trapping OOMs
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commitdiff
2010-05-21
jprocter
commented out debug code
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commitdiff
2010-05-17
jprocter
status can be null to begin with
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commitdiff
2010-05-17
jprocter
pullJobExecutionStats for JAL-493
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commitdiff
2010-05-17
jprocter
more robust jws2 service discovery
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commitdiff
2010-05-17
jprocter
refactored old jalview service code to its own package.
tree
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commitdiff
2010-05-17
jprocter
always pass full web service exception details to the log
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commitdiff
2010-05-17
jprocter
always pass full web service exception details to the log
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commitdiff
2010-05-17
jprocter
always log info about services that are discovered
tree
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commitdiff
2010-05-14
jprocter
First patch for * JAL-493
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2010-04-02
jprocter
indicate the database id source associated with the...
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commitdiff
2010-04-01
jprocter
prevent duplicate service submission links
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commitdiff
2010-04-01
jprocter
reinstate submission of database Ids as well as sequenc...
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commitdiff
2010-04-01
jprocter
refactored copy of groupURL mechanism into new Envision...
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commitdiff
2010-04-01
jprocter
new interface
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commitdiff
2010-03-26
jprocter
indicate which registry timed out.
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commitdiff
2010-03-11
jprocter
warning for unresolvable database source strings (or...
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commitdiff
2010-02-10
jprocter
only need to remove progress bar if fetch wasn't cancel...
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commitdiff
2009-06-24
jprocter
all alignment sequences associated with a dataset seque...
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commitdiff
2009-06-19
jprocter
bugfix mapped reference transfer and made picr ID retri...
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commitdiff
2009-06-19
jprocter
regex validator for uniprot
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commitdiff
2009-06-12
jprocter
reinstated blind querying of datasources. Transfer...
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commitdiff
2009-06-12
jprocter
more ID validation
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commitdiff
2009-06-08
jprocter
*experimental use of picr* apply gpl development license
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2009-02-24
jprocter
bugfix the bugfix
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commitdiff
2009-02-24
jprocter
bug fixes (infinite loop when fetcher given same sequen...
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commitdiff
2009-01-08
jprocter
refactor
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commitdiff
2008-12-19
jprocter
simple transformation of feature types like dbref and...
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commitdiff
2008-12-19
jprocter
todo
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commitdiff
2008-12-19
jprocter
wsdbfetch parameter change again (uniprotkb is dbname...
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commitdiff
2008-12-08
jprocter
DAS feature scores are parsed into floats on sequence...
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commitdiff
2008-12-04
jprocter
fetch database references for all EBI db + selected...
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commitdiff
2008-12-04
jprocter
sequence fetchers generated for local das sequence...
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commitdiff
2008-12-04
jprocter
minimise exceptions for bad uniprot ids
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commitdiff
2008-12-04
jprocter
select source by implementation class
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commitdiff
2008-12-04
jprocter
fix null pointer exception for sources which don't...
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commitdiff
2008-11-12
jprocter
bugfix to safely deal with server exception resulting...
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commitdiff
2008-11-04
jprocter
bugfix db ref retrieve routine so it removes dead query...
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commitdiff
2008-11-04
jprocter
implemented embl validation properly
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commitdiff
2008-11-04
jprocter
implemented embl validation properly
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commitdiff
2008-09-09
jprocter
links associated with non-positional features do not...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2008-08-26
jprocter
update Jpred3 service referenec
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commitdiff
2008-08-26
jprocter
uses shared singleton from jalview.gui.SequenceFetcher...
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commitdiff
2008-08-26
jprocter
pdb xrefs added as dbrefs and as PDB file links
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commitdiff
2008-08-15
jprocter
xrefs retrieved from Uniprot
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commitdiff
2008-08-06
jprocter
extra checks for datasetsequence for when getDbRefs...
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commitdiff
2008-08-04
jprocter
stackoverflow fix
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commitdiff
2008-08-04
jprocter
pfam seed and full alignment retrieval and nicer orderi...
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commitdiff
2008-08-01
jprocter
updated jalview version of dasobert 1.53e client and...
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commitdiff
2008-07-31
jprocter
refactored method for registering instance of a dbSourc...
tree
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commitdiff
2008-07-31
jprocter
quick fix for the new uniprot name schema - description...
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commitdiff
2008-07-31
jprocter
added specific retrieval arguments to SequneceFetcher...
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commitdiff
2008-05-26
jprocter
Uniprot is not actually a multi-acc capable source...
tree
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commitdiff
2008-05-26
jprocter
bugfix so MULTI_ACC capable sources value property...
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commitdiff
2008-04-29
jprocter
added SeqSearch service interface. Documented and refac...
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commitdiff
2008-04-17
jprocter
bugfix for refactoring (webservice windows wouldn't...
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commitdiff
2008-04-17
jprocter
javadoc and refactor of setWebService method to allow...
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commitdiff
2008-04-17
jprocter
javadoc for webservice client tutorial
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commitdiff
2008-04-17
jprocter
todos
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commitdiff
2008-04-11
jprocter
fix JPred thread so job aborts if submission fails.
tree
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commitdiff
2008-02-22
jprocter
explicit quote of chaincode in errror message
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commitdiff
2008-01-22
jprocter
ensured that seqeunce feature shift takes into account...
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commitdiff
2007-12-21
jprocter
uniprotxml format comment (ebi changed service parameter)
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commitdiff
2007-12-21
jprocter
sequence db fetcher and db reference validation/annotat...
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commitdiff
2007-11-16
jprocter
typo
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commitdiff
2007-11-16
jprocter
javadoc
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commitdiff
2007-11-16
jprocter
added generic method for adding new database proxies...
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commitdiff
2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
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commitdiff
2007-11-16
jprocter
refactor abstract sequence fetching and DBSource machin...
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commitdiff
2007-11-12
jprocter
added mechanism to initiate DAS feature fetching progra...
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commitdiff
2007-10-31
jprocter
factored out reference to parent alignFrame (so all...
tree
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commitdiff
2007-10-29
jprocter
bugfix for alignments without aligned codon frames
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commitdiff
2007-10-24
jprocter
individual query error/exception report and bugfix
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commitdiff
2007-09-29
jprocter
always update PDBEntry list if DBRefEntries might have...
tree
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commitdiff
2007-09-29
jprocter
use pdb refsource string
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commitdiff
2007-09-10
jprocter
ensure dbrefs are added to dataset sequence.
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commitdiff
2007-08-30
jprocter
refactored and ensured alCodonMappings are propagated...
tree
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commitdiff
2007-08-24
jprocter
remove null pointer exception when embl file is not...
tree
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commitdiff
2007-08-08
jprocter
generalise name of prediction method
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commitdiff
2007-07-13
jprocter
new DBRef management and generalised source and entry...
tree
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commitdiff
2007-02-07
amwaterhouse
Formatting
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commitdiff
2007-01-25
amwaterhouse
Command takes alignment, not gapChar
tree
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commitdiff
2007-01-18
amwaterhouse
File Parsing returns Alignments, not Sequence[]
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commitdiff
2006-12-21
amwaterhouse
remove unnecessary import
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commitdiff
2006-12-05
amwaterhouse
Sequence is char []
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commitdiff
2006-11-30
amwaterhouse
indexOf replaces contains
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commitdiff
2006-11-30
jprocter
fix bad grammar in new alignment title
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commitdiff
2006-11-08
amwaterhouse
Remove unnecessary imports
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commitdiff
2006-10-24
amwaterhouse
Uses RemoveGapsCommand
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commitdiff
2006-10-24
amwaterhouse
Remove variables not used
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commitdiff
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
tree
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commitdiff
2006-10-05
amwaterhouse
AlignFrame must take width and height
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commitdiff
2006-08-22
jprocter
hidden region recovery in JPred and new hidden region...
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
jprocter
Refactored Jnet and added hidden columns support.
tree
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commitdiff
2006-08-21
jprocter
avoid null pointer exceptions
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commitdiff
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