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Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into merge-212
[jalview.git]
/
src
/
jalview
/
ws
/
2019-07-10
Jim Procter
JAL-3070 standard way of storing/recovering documentati...
tree
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commitdiff
2019-07-10
Jim Procter
JAL-3070 remove final reference to Jws2Instance
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 dbreffetcher: record any feature display model...
tree
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commitdiff
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
tree
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commitdiff
2019-04-23
Jim Procter
Merge branch 'develop' into bug/JAL-3224_getdown_change...
tree
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commitdiff
2019-04-15
gmungoc
JAL-3193 no separatge EnsemblGenomes source in Sequence...
tree
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commitdiff
2019-03-21
Ben Soares
JAL-3130 Replaced deprecated Class.newInstance() with...
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-03-06
gmungoc
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...
tree
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commitdiff
2019-03-06
gmungoc
JAL-3035 more das bits removed
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-08-06
Jim Procter
JAL-3070 additional interfaces for web services (not...
tree
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commitdiff
2018-08-03
Jim Procter
JAL-3070 MsaWSClient doens’t depend on Jws2Instance...
tree
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commitdiff
2018-08-03
Jim Procter
JAL-3070 web service handle with UIinfo.hasParameters...
tree
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commitdiff
2018-08-02
Jim Procter
JAL-3070 base interface for service endpoint implementa...
tree
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commitdiff
2018-08-02
Jim Procter
JAL-3070 set host URL correctly from parsed description...
tree
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commitdiff
2018-08-01
Jim Procter
JAL-3070 refactored Client specific code from jalview...
tree
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commitdiff
2018-07-27
Jim Procter
JAL-3070 pull up sequence anonymisation hash, presets...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 pull up logic for offering a parameters dialog...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 abstract class for services with adjustable...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 use ArgumentI in all public constructors,...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 pull up setWebService and alignFrame reference
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 UIinfo provides JobParameterStoreI
tree
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commitdiff
2018-07-23
Jim Procter
JAL-3070 pushed down JABAWS specific args for WsJobPara...
tree
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commitdiff
2018-07-23
Jim Procter
JAL-3070 refactored JABAWS specific jalview.gui.WsJobPa...
tree
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commitdiff
2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 pull up hostURL and postURL to UIinfo and...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 core service descriptors for JABAWS services...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 refactored base analysis action descriptor...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-31
Jim Procter
Merge branch 'spike/JAL-1950_hmmer3client' into feature...
tree
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commitdiff
2018-05-31
Jim Procter
Merge branch 'develop' into spike/JAL-1950_hmmer3client
tree
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commitdiff
2018-05-30
gmungoc
JAL-3008 new parameter type RadioChoiceParameter
tree
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commitdiff
2018-05-30
gmungoc
JAL-3005 new argument type FileParameter for file chooser
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 support value display names for Option or...
tree
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commitdiff
2018-05-09
gmungoc
JAL-2714 HMMSearch cutoff by E-Value, Score or None
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 slider scale factor now derived from min-max...
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 OptionBox FlowLayout, tweaks to wrapping of...
tree
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commitdiff
2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2937 use preferences for presets, simplify some...
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 xfam https
features/JAL-2885UniprotHttps
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 XFAM_DOMAIN->XFAM_BASEURL
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 renamed base URL getter from getDomain..
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 don’t create a mapping if sequence...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 only create a mapping entry or write...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 JAL-2780 include sequence start number when...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 use PDBe numbering to map between...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 include a Mapping object in Structure...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 UNASSIGNED positions marked as Intege...
tree
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commitdiff
2018-02-09
Jim Procter
Use the “PDBe” or “PDB” numbering (starts from 1, corre...
tree
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commitdiff
2018-02-09
Jim Procter
JAL-2780 JAL-2781 should always ensure SIFTS mappings...
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'features/JAL-2758_shorteruniprot' into...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 typo
tree
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commitdiff
2017-11-06
Jim Procter
Merge branch 'bug/JAL-2541cutRelocateFeatures' into...
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
tree
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commitdiff
2017-10-25
Jim Procter
JAL-2790 provide a cancel button for JABAWS and AACon...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-06
Jim Procter
JAL-2758 flag and tests for omitting uniprot accession...
features/JAL-2758_shorteruniprot
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
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