2019-07-10 |
Jim Procter | JAL-3070 standard way of storing/recovering documentati... |
tree | commitdiff |
2019-07-10 |
Jim Procter | JAL-3070 remove final reference to Jws2Instance |
tree | commitdiff |
2019-07-10 |
Jim Procter | Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha... |
tree | commitdiff |
2019-07-10 |
Jim Procter | Merge branch 'merge/JAL-3285_mchmmer_with_211_develop... |
tree | commitdiff |
2019-06-26 |
Jim Procter | JAL-3332 test to check for duplicate db sources and... |
tree | commitdiff |
2019-06-24 |
Jim Procter | JAL-3330 dbreffetcher: record any feature display model... |
tree | commitdiff |
2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
tree | commitdiff |
2019-04-23 |
Jim Procter | Merge branch 'develop' into bug/JAL-3224_getdown_change... |
tree | commitdiff |
2019-04-17 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-04-15 |
gmungoc | JAL-3193 no separatge EnsemblGenomes source in Sequence... |
tree | commitdiff |
2019-04-04 |
gmungoc | JAL-3220 j2sIgnore on main methods on test / utility... |
tree | commitdiff |
2019-04-04 |
gmungoc | JAL-3220 unneeded main methods removed |
tree | commitdiff |
2019-04-03 |
hansonr | j2sNative clean-up. Fixes problem with second try of... |
tree | commitdiff |
2019-03-31 |
hansonr | clean up implicit object refs |
tree | commitdiff |
2019-03-27 |
hansonr | consolidation of Platform isJS calls |
tree | commitdiff |
2019-03-21 |
Ben Soares | JAL-3130 Replaced deprecated Class.newInstance() with... |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-03-06 |
gmungoc | Merge branch 'tasks/JAL-3035_remove_dasobert_dependency... |
tree | commitdiff |
2019-03-06 |
gmungoc | JAL-3035 more das bits removed |
tree | commitdiff |
2019-03-04 |
gmungoc | Merge branch 'bug/JAL-3120restoreFeatureColour' into... |
tree | commitdiff |
2019-01-26 |
hansonr | Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -... |
tree | commitdiff |
2019-01-17 |
gmungoc | Merge branch 'develop' into Jalview-BH/JAL-3026-JAL... |
tree | commitdiff |
2019-01-17 |
Jim Procter | JAL-3116 clear out whitespace when materialising Sequen... |
tree | commitdiff |
2019-01-16 |
Jim Procter | Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... |
tree | commitdiff |
2018-12-17 |
Jim Procter | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-11-08 |
gmungoc | JAL-3116 better unmarshalling of EMBL/Uniprot XML |
tree | commitdiff |
2018-10-31 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree |
tree | commitdiff |
2018-10-29 |
gmungoc | JAL-3144 SequenceFetcher without JDatabaseTree |
tree | commitdiff |
2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
tree | commitdiff |
2018-09-21 |
gmungoc | JAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour |
tree | commitdiff |
2018-09-17 |
gmungoc | JAL-3116 unit tests adapted to EMBL over JAXB |
tree | commitdiff |
2018-09-14 |
gmungoc | JAL-3116 parse EMBL XML with JAXB (todo: update unit... |
tree | commitdiff |
2018-09-13 |
gmungoc | JAL-3116 Uniprot XML unmarshalled using JAXB not Castor |
tree | commitdiff |
2018-09-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_Branch |
tree | commitdiff |
2018-08-24 |
hansonr | JAL-3026 GD#107,128,130,139 build-site.xml |
tree | commitdiff |
2018-08-21 |
hansonr | mc_view references were MCview |
tree | commitdiff |
2018-08-06 |
Jim Procter | JAL-3070 additional interfaces for web services (not... |
tree | commitdiff |
2018-08-03 |
Jim Procter | JAL-3070 MsaWSClient doens’t depend on Jws2Instance... |
tree | commitdiff |
2018-08-03 |
Jim Procter | JAL-3070 web service handle with UIinfo.hasParameters... |
tree | commitdiff |
2018-08-02 |
Jim Procter | JAL-3070 base interface for service endpoint implementa... |
tree | commitdiff |
2018-08-02 |
Jim Procter | JAL-3070 set host URL correctly from parsed description... |
tree | commitdiff |
2018-08-01 |
Jim Procter | JAL-3070 refactored Client specific code from jalview... |
tree | commitdiff |
2018-07-27 |
Jim Procter | JAL-3070 pull up sequence anonymisation hash, presets... |
tree | commitdiff |
2018-07-26 |
Jim Procter | JAL-3070 pull up logic for offering a parameters dialog... |
tree | commitdiff |
2018-07-26 |
Jim Procter | JAL-3070 abstract class for services with adjustable... |
tree | commitdiff |
2018-07-26 |
Jim Procter | JAL-3070 use ArgumentI in all public constructors,... |
tree | commitdiff |
2018-07-26 |
Jim Procter | JAL-3070 pull up setWebService and alignFrame reference |
tree | commitdiff |
2018-07-26 |
Jim Procter | JAL-3070 UIinfo provides JobParameterStoreI |
tree | commitdiff |
2018-07-23 |
Jim Procter | JAL-3070 pushed down JABAWS specific args for WsJobPara... |
tree | commitdiff |
2018-07-23 |
Jim Procter | JAL-3070 refactored JABAWS specific jalview.gui.WsJobPa... |
tree | commitdiff |
2018-07-23 |
Jim Procter | Merge branch 'features/mchmmer' into merge/wsinterfaces... |
tree | commitdiff |
2018-07-20 |
Jim Procter | JAL-3070 pull up hostURL and postURL to UIinfo and... |
tree | commitdiff |
2018-07-20 |
Jim Procter | JAL-3070 core service descriptors for JABAWS services... |
tree | commitdiff |
2018-07-20 |
Jim Procter | JAL-3070 refactored base analysis action descriptor... |
tree | commitdiff |
2018-07-10 |
gmungoc | JAL-3048 code reordered for JalviewJS compliance |
tree | commitdiff |
2018-06-27 |
hansonr | JAL-3032 just the changes pulled already |
tree | commitdiff |
2018-06-26 |
Jim Procter | Merge branch 'tasks/JAL-3035_remove_dasobert_dependency... |
tree | commitdiff |
2018-06-26 |
Jim Procter | JAL-3035 - jalview-das is no more ! |
tree | commitdiff |
2018-06-22 |
gmungoc | JAL-3032 avoid assignments on the same line as synchronized |
tree | commitdiff |
2018-06-07 |
gmungoc | JAL-2920 wrap description in <html/> if it includes... |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-2920 revised TODO for JAL-3025 bug/JAL-2920_uniprotvariantfeature |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-2920 don’t output variant/original sequence as... |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-1920 JAL-3017 use newline not <br/> in description... |
tree | commitdiff |
2018-06-04 |
Jim Procter | JAL-3017 parse multiple variant elements for uniprot... |
tree | commitdiff |
2018-05-31 |
Jim Procter | Merge branch 'spike/JAL-1950_hmmer3client' into feature... |
tree | commitdiff |
2018-05-31 |
Jim Procter | Merge branch 'develop' into spike/JAL-1950_hmmer3client |
tree | commitdiff |
2018-05-30 |
gmungoc | JAL-3008 new parameter type RadioChoiceParameter |
tree | commitdiff |
2018-05-30 |
gmungoc | JAL-3005 new argument type FileParameter for file chooser |
tree | commitdiff |
2018-05-21 |
gmungoc | JAL-2920 use HGVS notation for protein variant feature |
tree | commitdiff |
2018-05-14 |
gmungoc | JAL-2989 support value display names for Option or... |
tree | commitdiff |
2018-05-09 |
gmungoc | JAL-2714 HMMSearch cutoff by E-Value, Score or None |
tree | commitdiff |
2018-04-20 |
gmungoc | JAL-591 slider scale factor now derived from min-max... |
tree | commitdiff |
2018-04-20 |
gmungoc | JAL-591 OptionBox FlowLayout, tweaks to wrapping of... |
tree | commitdiff |
2018-04-17 |
gmungoc | JAL-2629 choice of hmm profile now a parameter not... |
tree | commitdiff |
2018-04-16 |
gmungoc | JAL-2937 use preferences for presets, simplify some... |
tree | commitdiff |
2018-03-16 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2018-03-08 |
gmungoc | JAL-2885 tests updated for code changes |
tree | commitdiff |
2018-02-27 |
Jim Procter | Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104 |
tree | commitdiff |
2018-02-23 |
Jim Procter | Merge branch 'features/JAL-2885UniprotHttps' into relea... |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 xfam https features/JAL-2885UniprotHttps |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 XFAM_DOMAIN->XFAM_BASEURL |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 renamed base URL getter from getDomain.. |
tree | commitdiff |
2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
tree | commitdiff |
2018-02-13 |
Jim Procter | JAL-2780 JAL-2781 don’t create a mapping if sequence... |
tree | commitdiff |
2018-02-13 |
Jim Procter | JAL-2780 JAL-2781 only create a mapping entry or write... |
tree | commitdiff |
2018-02-13 |
Jim Procter | JAL-2781 JAL-2780 include sequence start number when... |
tree | commitdiff |
2018-02-13 |
Jim Procter | JAL-2781 refactor ‘trim retrieved sequence’ preference... |
tree | commitdiff |
2018-02-11 |
Jim Procter | JAL-2780 JAL-2781 use PDBe numbering to map between... |
tree | commitdiff |
2018-02-11 |
Jim Procter | JAL-2781 mark aligned positions via StructureMapping... |
tree | commitdiff |
2018-02-11 |
Jim Procter | JAL-2780 JAL-2781 include a Mapping object in Structure... |
tree | commitdiff |
2018-02-11 |
Jim Procter | JAL-2780 JAL-2781 UNASSIGNED positions marked as Intege... |
tree | commitdiff |
2018-02-09 |
Jim Procter | Use the “PDBe” or “PDB” numbering (starts from 1, corre... |
tree | commitdiff |
2018-02-09 |
Jim Procter | JAL-2780 JAL-2781 should always ensure SIFTS mappings... |
tree | commitdiff |
2018-01-19 |
kiramt | JAL-2759 Moved propagateInsertions out of HiddenColumns |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings) |
tree | commitdiff |
2017-11-16 |
Jim Procter | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures |
tree | commitdiff |
2017-11-13 |
Jim Procter | Merge branch 'features/JAL-2758_shorteruniprot' into... |
tree | commitdiff |
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