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JAL-1233 tidy up and use same RNA helix colours in colour by annotation and RNA helix...
[jalview.git] / src / jalview / ws /
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into develop tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to... tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into develop tree | commitdiff
2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown... tree | commitdiff
2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder predict... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDat... tree | commitdiff
2014-04-21 Jim ProcterJAL-967 JAL-1482 new feature renderer api - needs more... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequenc... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control... tree | commitdiff
2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each... tree | commitdiff
2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into develop tree | commitdiff
2014-02-21 Jim Procterpatch for JAL-1449 - continuance of JAL-1364 - check... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into develop tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_1_Branch tree | commitdiff
2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handlin... tree | commitdiff
2013-12-25 darolmarJAL-1355 (basic i18n support) tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences... tree | commitdiff
2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore... tree | commitdiff
2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary... tree | commitdiff
2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto... tree | commitdiff
2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries... tree | commitdiff
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metad... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous... tree | commitdiff
2013-09-20 Jim Procterformatting tree | commitdiff
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold tree | commitdiff
2013-08-30 Daniel BartonColour be RNA helices bug fixed tree | commitdiff
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices... tree | commitdiff
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation... tree | commitdiff
2013-08-27 Jim ProcterMerge branch 'JAL-1359_patch' into develop tree | commitdiff
2013-08-27 Jim ProcterJAL-1359 simpler logic for deciding if all threads... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 Just the eclipse project/classpath files so... tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1321_jws2_tooltips' into develop tree | commitdiff
2013-06-19 Jim ProcterJAL-1240 avoid NPE when source has no proxy available tree | commitdiff
2013-06-19 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-19 Jim ProcterMerge branch 'JAL-1321_jws2_tooltips' into develop tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 ascending alphabetical order tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 sort options and parameters according to their... tree | commitdiff
2013-06-18 Jim Proctertypo tree | commitdiff
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-18 Jim ProcterJAL-674 - avoid java.util.ConcurrentModificationExcepti... tree | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1319_jronn_npe' into develop tree | commitdiff
2013-06-17 Jim ProcterJAL-1319 (blacklist fix) check for presence of a score... tree | commitdiff
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-09 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-09 Jim Procterfix for JAL-1298 tree | commitdiff
2013-06-09 Jim ProcterJAL-715 - TODO tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-07 Jim ProcterJAL-1309 fix broken partition computation for adding... tree | commitdiff
2013-06-07 Jim ProcterJAL-945 uniquify prior to submission tree | commitdiff
2013-06-07 Jim Procterformatting tree | commitdiff
2013-06-07 Jim ProcterJAL-715 allow headless construction for testing tree | commitdiff
2013-06-07 Jim ProcterJAL-724 JAL-715 refactor and create new test for RSBS... tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... tree | commitdiff
2013-05-24 Jim Proctertypo tree | commitdiff
2013-02-11 jprocterupgrade to latest paradise services model using JSon... tree | commitdiff
2013-01-20 jprocterMerge branch 'Dbfetch_hotfix-JAL-1238' into develop tree | commitdiff
2013-01-18 jprocterJAL-1238 order to place primary sources before lower... tree | commitdiff
2013-01-18 jprocterJAL-1238 method to test if DAS source is a primary... tree | commitdiff
2013-01-18 jprocterJAL-1238 tier index indicating distance of a source... tree | commitdiff
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into develop tree | commitdiff
2012-12-11 jprocterJAL-1217 check and avoid NPE if no datastore object... tree | commitdiff
2012-12-11 jprocterJAL-1217 report exception for service when no datastore... tree | commitdiff
2012-11-17 jprocterreturn alignmentI created from pdbfile class directly... tree | commitdiff
2012-11-17 jproctercall annotate3d service and parse rnaml to alignment tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jproctersimple HTTP multipart entity poster - may not be useful tree | commitdiff
2012-11-15 jproctersource formatting tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch... tree | commitdiff
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... tree | commitdiff
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to... tree | commitdiff
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global... tree | commitdiff
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