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format adapter should return AlignmentI
[jalview.git]
/
src
/
jalview
/
2012-11-17
jprocter
format adapter should return AlignmentI
tree
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commitdiff
2012-11-17
jprocter
formatting
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commitdiff
2012-11-17
jprocter
call annotate3d service and parse rnaml to alignment
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commitdiff
2012-11-17
jprocter
formatting
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commitdiff
2012-11-17
jprocter
sequence numbering from 1
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commitdiff
2012-11-17
jprocter
formatting
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commitdiff
2012-11-17
jprocter
store chaincode on pdbentry
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commitdiff
2012-11-17
jprocter
formatting
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commitdiff
2012-11-17
jprocter
simple HTTP multipart entity poster - may not be useful
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commitdiff
2012-11-17
jprocter
openjdk7 returns null for default value selected format...
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commitdiff
2012-11-17
jprocter
method to construct sequence mapping for matching posit...
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commitdiff
2012-11-17
jprocter
convenience method for performing pairwise alignment
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commitdiff
2012-11-17
jprocter
formatting and javadoc
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commitdiff
2012-11-15
jprocter
don't set background colour for menu bar
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commitdiff
2012-11-15
jprocter
allow .rnaml as a filename extension
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commitdiff
2012-11-15
jprocter
comment on jalview.io.AlignFile architecture
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commitdiff
2012-11-15
jprocter
source formatting
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
2012-11-09
jprocter
constructor takes settings from any existing feature...
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commitdiff
2012-11-08
jprocter
JAL-1193 ensure the 'loadedComplete' method gets called...
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commitdiff
2012-11-08
jprocter
tidy imports
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commitdiff
2012-11-07
jprocter
JAL-957 manual update to applet authorlist - need to...
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commitdiff
2012-10-24
jprocter
JAL-1193 call setLoadingFromArchiveFinished(true) for...
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commitdiff
2012-10-24
jprocter
JAL-1193 patch prevents JalviewJmolBinding from handlin...
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-04
jprocter
Merge branch 'develop' into Release_2_8_Branch
tree
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commitdiff
2012-10-04
jprocter
JAL-636 switch to simple REST interface to dbfetch...
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commitdiff
2012-10-04
jprocter
avoid importing the mapping every time we parse a unipr...
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commitdiff
2012-10-04
jprocter
JAL-636 tweak main() based test to allow DAS sources...
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commitdiff
2012-10-04
jprocter
JAL-1188 - set the user agent to Jalview Desktop/$...
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commitdiff
2012-10-04
jprocter
JAL-1064 JAL-671 make sure all buttons are disabled...
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-10-03
jprocter
JAL-1026 - insert a sensible default for proxy so Jalvi...
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commitdiff
2012-10-03
jprocter
JAL-1183 JAL-343 - use dialog queue for JABA warning...
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commitdiff
2012-10-02
jprocter
JAL-1185 patch NPE - create new group for subtree on...
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1137 messy hardcoding of author list to...
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1139 hardcode preferred height to logo...
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commitdiff
2012-10-01
jprocter
JAL-1130 more robust loading code and different logos...
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog thread is only started after the splash...
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commitdiff
2012-10-01
jprocter
JAL-1111 dialog flickers whilst example file starts...
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commitdiff
2012-10-01
jprocter
JAL-1184 apparent deadlock when launching jalview on...
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commitdiff
2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
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commitdiff
2012-10-01
jprocter
JAL-1183 use dialog queue for usage statistics prompt
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog queue
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commitdiff
2012-09-27
jprocter
JAL-1030 patch typo
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commitdiff
2012-09-27
jprocter
JAL-1179 - regression from JAL-1030 patch implicitly...
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commitdiff
2012-09-25
jprocter
JAL-1031 allow empty selections to pass through to...
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commitdiff
2012-09-25
jprocter
JAL-1179 note and patch for exceptions raised when...
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commitdiff
2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
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commitdiff
2012-09-25
jprocter
JAL-1010 write validated value back to text field to...
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commitdiff
2012-09-25
jprocter
JAL-1173 - trap redraw buffer OOM errors. needs a test...
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commitdiff
2012-09-25
jprocter
JAL-1173 try to catch OOMs when loading annotation...
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commitdiff
2012-09-24
jprocter
JAL-958 revised applet parameter documentation to stand...
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commitdiff
2012-09-24
jprocter
formatting
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commitdiff
2012-09-24
jprocter
JAL-958 normalise logo menu options in applet
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commitdiff
2012-09-24
jprocter
JAL-958 enable logo display when normalise option selected
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
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commitdiff
2012-09-24
jprocter
only recalc group conservation after last sequence...
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
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commitdiff
2012-09-21
jprocter
JAL-849 try harder and wait for longer for JABAWS to...
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commitdiff
2012-09-21
jprocter
JAL-1171 refactor code to allow gui update for global...
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commitdiff
2012-09-21
jprocter
JAL-1165 visual delay whilst results are processed.
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commitdiff
2012-09-21
jprocter
JAL-1165 allow progress indicators on the web service...
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commitdiff
2012-09-21
jprocter
JAL-1130 jalview spinning icon for web service dialog
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commitdiff
2012-09-21
jprocter
JAL-1130 splashscreen logo
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo in help, splash screen and web servic...
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo spinner in webservices status window
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commitdiff
2012-09-19
jprocter
JAL-1130 made SplashScreen able to be a dialog that...
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commitdiff
2012-09-19
jprocter
JAL-1130 refactored standard hyperlink handler code...
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commitdiff
2012-09-19
jprocter
JAL-1130 trial view of new logo on splashscreen.
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commitdiff
2012-09-19
jprocter
JAL-1170 column and row positions confused in implement...
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commitdiff
2012-09-06
jprocter
JAL-958 flag indicating if visualization settings for...
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commitdiff
2012-09-06
jprocter
JAL-958 store/recover normalised flag
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commitdiff
2012-09-06
jprocter
JAL-958 store normalised flag in jalview project
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commitdiff
2012-09-06
jprocter
JAL-1027 JAL-1167 documentation and patched DNA/RNA...
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commitdiff
2012-09-06
jprocter
JAL-1013 - employ index parameter rather than hardcode...
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commitdiff
2012-09-06
jprocter
JAL-1167 method and simple tests for printing score...
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commitdiff
2012-09-05
jprocter
JAL-979 tidy up shmmr hardcoded WS definition
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commitdiff
2012-09-05
jprocter
JAL-1136 give pre-existing custom settings a special...
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commitdiff
2012-09-05
jprocter
formatting
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commitdiff
2012-09-05
jprocter
patch for NPE when no services are available to resolve...
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commitdiff
2012-09-05
jprocter
JAL-975 null any existing preset if user has supplied...
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commitdiff
2012-09-05
jprocter
JAL-1162 catch security exception and just use bare...
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commitdiff
2012-09-05
jprocter
JAL-994 fix when sequence is too short and no jobs run
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commitdiff
2012-09-05
jprocter
JAL-1111 allow news reader window to be moved even...
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commitdiff
2012-09-05
jprocter
JAL-976 fix AACon name typo in source and GUI
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commitdiff
2012-09-04
jprocter
off by one for sequence associated annotation
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commitdiff
2012-09-04
jprocter
unused variable
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commitdiff
2012-09-04
jprocter
JAL-974 JRonn thresholds
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commitdiff
2012-09-03
jprocter
JAL-591 adapt option layout to width of dialog box
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commitdiff
2012-09-03
jprocter
JAL-975 JAL-974 JAL-976 always adjust height after...
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commitdiff
2012-09-03
jprocter
JAL-974 show thresholds for disorder predictor annotati...
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commitdiff
2012-09-03
jprocter
JAL-1153 ensure _linecolour is copied in copy constructor
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commitdiff
2012-09-03
jprocter
JAL-1111 news reader shouldn't be modal.
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commitdiff
2012-09-03
jprocter
JAL-1111 doh - helps if you pass modality flag onto...
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commitdiff
2012-09-02
jprocter
JAL-812 only trigger alignment redraw and calculation...
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commitdiff
2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
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commitdiff
2012-09-02
jprocter
JAL-1158 - request focus after opening window.
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commitdiff
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