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JAL-3577 Moved application Categories for freedesktop menus into correct place in...
[jalview.git]
/
src
/
jalview
/
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
tree
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commitdiff
2019-07-05
gmungoc
JAL-3187 initial refactoring towards peptide variant...
tree
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commitdiff
2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
tree
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commitdiff
2019-07-02
Jim Procter
JAL-3111 JAL-3280 hide the version check preference...
tree
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commitdiff
2019-07-02
Jim Procter
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
tree
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commitdiff
2019-07-01
Ben Soares
JAL-3333 removed unused variable
tree
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commitdiff
2019-07-01
Ben Soares
JAL-3333 using floats for smoother weighting
tree
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commitdiff
2019-06-29
Ben Soares
JAL-3333 Sorry couldn't resist adding a bit of weightin...
tree
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commitdiff
2019-06-29
Ben Soares
JAL-3333 Title text now appears instantly. Altering...
tree
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commitdiff
2019-06-28
Ben Soares
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 changed RGB model. Tested in mojave and Windo...
tree
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commitdiff
2019-06-28
Jim Procter
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Smooth rotation of image now too
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 added height to rotating image preferred size
tree
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commitdiff
2019-06-28
Jim Procter
JAL-3330 apply Ensembl feature settings when showing...
bug/JAL-3330_backpropagateEnsemblFeatureColours
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Replaced title text rendered in animated image...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3334 fix - always load full SO to resolve the seque...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3111 get rid of nasty tab characters
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 javadoc
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating view after fetch...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 dbreffetcher: record any feature display model...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating views when show...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
tree
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commitdiff
2019-06-19
Ben Soares
Merge branch 'merge/JAL-3310_and_JAL-3300' into develop
tree
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commitdiff
2019-06-19
Ben Soares
JAL-3321 Last pieces of the getdown-launcher.jar upgrad...
tree
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commitdiff
2019-06-19
Jim Procter
Merge branch 'develop' into documentation/JAL-3111_rele...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3313 don't double count mapped codons
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-2830_editManglesDatasetSequence...
tree
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commitdiff
2019-06-18
Ben Soares
Merge branch 'develop' into merge/JAL-3310_and_JAL...
tree
|
commitdiff
2019-06-18
gmungoc
JAL-3187 javadoc
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-3286duplicatePdbQuery' into develop
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features also for...
tree
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commitdiff
2019-06-18
Ben Soares
JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3187 i18n show linked features checkboxes
tree
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commitdiff
2019-06-18
gmungoc
JAL-3305 mirror popup menu column selections in split...
tree
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commitdiff
2019-06-17
Ben Soares
JAL-3310 JAL-3300 two getdown fixes merged
tree
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commitdiff
2019-06-17
gmungoc
JAL-2792 JAL-3187 linked features (if shown) in Feature...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 update alignAs code and unit tests for 'shared...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 add sequence to feature details table (and...
tree
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commitdiff
2019-06-17
Jim Procter
JAL-3311 remove menus and documentation relating to...
tasks/JAL-3311_removeVamsasMenu
tree
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commitdiff
2019-06-14
Ben Soares
JAL-3295 pre-merged code with JAL-3295 branch which...
tree
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commitdiff
2019-06-14
Ben Soares
JAL-3278 A system.out.println turned into a cache.log...
tree
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commitdiff
2019-06-14
Jim Procter
JAL-3111 report build type and commit in stdout from...
tree
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commitdiff
2019-06-14
Jim Procter
JAL-3299 JAL-3280 javadoc on BuildDetails bean
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2019-06-13
gmungoc
JAL-3303 ignore deletions when computing peptide variants
tree
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commitdiff
2019-06-13
Jim Procter
Merge branch 'bug/JAL-3295_CMD_select_not_working_in_se...
tree
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commitdiff
2019-06-13
gmungoc
JAL-3143 recognise lnc_RNA as transcript
tree
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commitdiff
2019-06-12
Ben Soares
JAL-3295 Fixed CMD-select of sequences in alignment...
tree
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commitdiff
2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-11
gmungoc
JAL-3143 also parse "phase" from JSON response if present
tree
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commitdiff
2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-11
gmungoc
JAL-3288 fixes for gain/lose focus
tree
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commitdiff
2019-06-11
gmungoc
JAL-3187 CDS has same dataset sequence as transcript
tree
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commitdiff
2019-06-10
gmungoc
JAL-3296 ensure sequence cursor reset when sequence...
bug/JAL-3296changeStartInvalidateCursor
tree
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commitdiff
2019-06-07
gmungoc
JAL-3187 save and restore flags for show complement...
tree
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commitdiff
2019-06-07
gmungoc
JAL-3187 change fields to local variables
tree
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commitdiff
2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-07
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
tree
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commitdiff
2019-06-07
gmungoc
JAL-3187 Viewport schema attributes for showComplementF...
tree
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commitdiff
2019-06-07
gmungoc
JAL-3251 added optional attributes Sequence.biotype...
tree
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commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
tree
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commitdiff
2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-05
gmungoc
JAL-3288 override JInternalFrame.setSelected() to avoid...
bug/JAL-3288splitFrameMenusJava11
tree
|
commitdiff
2019-06-04
gmungoc
JAL-2386 avoid duplicate pdbids in free text query
bug/JAL-3286duplicatePdbQuery
tree
|
commitdiff
2019-05-31
Ben Soares
JAL-3247 Adjusted Uninstall Old Jalview.app to just...
tree
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commitdiff
2019-05-29
gmungoc
JAL-2738 error logging if no ##reference found
tree
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commitdiff
2019-05-29
gmungoc
JAL-2738 accept .csi, default to GRCh37:homo_sapiens...
tree
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commitdiff
2019-05-28
Ben Soares
JAL-1988 Some TEST code accidentally left in now remove...
tree
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commitdiff
2019-05-27
Ben Soares
JAL-3141 Added HashMap types for Java 1.8 compatibility
tree
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commitdiff
2019-05-27
Ben Soares
Merge branch 'task/JAL-3141_Customise_checkbox' into...
tree
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commitdiff
2019-05-27
Ben Soares
JAL-3141 Object array cast missing
tree
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commitdiff
2019-05-27
Ben Soares
Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
tree
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commitdiff
2019-05-27
Ben Soares
JAL-3141 Generified the JvUtils.buildComboWithTooltips...
tree
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commitdiff
2019-05-25
Ben Soares
JAL-3141 One more error log fix
tree
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commitdiff
2019-05-25
Ben Soares
JAL-3141 Added tooltips on Schemes dropdown and Customi...
tree
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Fixes recommended from gmc's test
tree
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Fixed vertical size of the example filenames...
tree
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
tree
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commitdiff
2019-05-22
Ben Soares
Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
tree
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commitdiff
2019-05-21
Ben Soares
JAL-3247 Launcher start improvements. RPM and DEB no...
tree
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commitdiff
2019-05-20
Ben Soares
JAL-3254 Improved memory setting (allows mem for OS...
tree
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commitdiff
2019-05-06
gmungoc
JAL-3239 release note
tree
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commitdiff
2019-05-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3239monosp...
tree
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commitdiff
2019-05-06
gmungoc
JAL-3244 delete obsolete method
tree
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commitdiff
2019-05-02
gmungoc
JAL-3239 draw EPS or SVG one character at a time (even...
bug/JAL-3239monospacedEps
tree
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commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
tree
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commitdiff
2019-04-30
gmungoc
JAL-3241 simplified enum constructors for classloadabil...
tree
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commitdiff
2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
tree
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commitdiff
2019-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2019-04-26
gmungoc
JAL-2743 class Javadoc
tree
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commitdiff
2019-04-26
gmungoc
JAL-2738 JAL-2743 properties to map VCF header to speci...
tree
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commitdiff
2019-04-26
Ben Soares
JAL-3233 Added isAMac check for -Xdock:icon addition...
tree
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commitdiff
2019-04-26
gmungoc
JAL-3010 borderless 'x' for "delete this filter condition"
tree
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commitdiff
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