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JAL-3010 options to hide / apply changes to ontology sub-types
[jalview.git]
/
src
/
jalview
/
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
tree
|
commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
|
commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Move isVisible to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 tidy
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Update tests
tree
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commitdiff
2017-11-17
gmungoc
JAL-2808 set (read-only) condition text field as disabled
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Convert reveal to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 HiddenColumnsCursor tests
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-16
gmungoc
JAL-2069 fix minor bugs in variable setting
tree
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commitdiff
2017-11-16
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
tree
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commitdiff
2017-11-16
gmungoc
JAL-2069 removed unused and redundant thresholdIsMinMax
tree
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commitdiff
2017-11-16
kiramt
JAL-2842 remove infinite loop in cursor move
bug/JAL-2842
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 Don't show cursor if position in hidden region
tree
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commitdiff
2017-11-15
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-15
gmungoc
JAL-2816 exclude filtered / thresholded out features...
tree
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commitdiff
2017-11-15
kiramt
JAL-2811 Updated following review
bug/JAL-2811
tree
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commitdiff
2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
tree
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commitdiff
2017-11-15
kiramt
JAL-2834 JAL-2836 temporarily disabled wrapped mode...
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 take all CSQ fields; catch invalid field match...
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 code tidy (generic type constructors)
tree
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commitdiff
2017-11-15
gmungoc
JAL-2069 dialog title now 'Variable colour'
tree
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commitdiff
2017-11-15
gmungoc
JAL- 2835 support filter on nested attribute keys
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 add filters for VCF/VEP 'fields of interest'
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 ported to applet
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidies and tests
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidy
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Changed to overlay on via graphics context...
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Missed commit
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Made it work for hidden columns/seqs too
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'imp/JAL-2774' into bug/JAL-2831
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Tidy
tree
|
commitdiff
2017-11-13
Jim Procter
Merge branch 'features/JAL-2758_shorteruniprot' into...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 typo
tree
|
commitdiff
2017-11-13
gmungoc
JAL-2738 stubs for filtering VEP and VCF fields of...
tree
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commitdiff
2017-11-13
kiramt
JAl-2811 Working for wrapped panels too
tree
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commitdiff
2017-11-13
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Add layer for cursor in SeqCanvas
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'imp/JAL-2810_ftsIDtab' into develop
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-13
kiramt
JAL-2784 new checks for gg==null
bug/JAL-2784
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 auto search checkbox state stored as user...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2679 example accession changed to CAD01290
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 mainFramTabs -> tabs
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 convert findColumnPosition to use cursor
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 Converted getHiddenBoundaryLeft/Right to use...
tree
|
commitdiff
2017-11-10
Jim Procter
JAL-2828 allow CalcId to match on String equivalence...
doc/JAL-2494_JAL-2828_mergefindAnnotation
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 refactored duplicate code for searching lists...
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
|
commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-10
kiramt
JAL-2827 related fixes for stem and non-canonical annot...
bug/JAL-2827
tree
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commitdiff
2017-11-10
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-09
kiramt
JAL-2827 Fix notched repaint of helix annotation when...
tree
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commitdiff
2017-11-09
kiramt
JAL-2759 make bounds correct for left scrolling with...
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-08
gmungoc
JAL-2808 i18n, widget state settings
tree
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commitdiff
2017-11-08
Jim Procter
Merge branch 'develop' into bug/JAL-2225mapMultipleChains
tree
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commitdiff
2017-11-08
gmungoc
JAL-2069 updated spike to latest
tree
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commitdiff
2017-11-08
gmungoc
JAL-2069 ensure threshline instantiated to avoid NPE
tree
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commitdiff
2017-11-08
gmungoc
JAL-2069 (helper method for) italic titled borders
tree
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commitdiff
2017-11-07
Jim Procter
Merge branch 'imp/JAL-2775' into develop
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 i18n tab label
tree
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commitdiff
2017-11-07
kiramt
JAL-2774 Added javadoc for new event parameters
imp/JAL-2774
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher...
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 working back button shown for bulk ID retrieva...
tree
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commitdiff
2017-11-07
kiramt
JAL-2774 Fix fastpaint of wrapped alignment
tree
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commitdiff
2017-11-07
kiramt
JAL-2821 refactored drawPartialGroupOutline
bug/JAL-2821
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike to latest (no value colour options)
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 choice of no / min / max colour if 'no attribu...
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 bulk fetch for PDB IDs
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike with latest
tree
|
commitdiff
2017-11-07
gmungoc
JAL-2069 corrected overloaded constructor behaviour
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 add 'by attribute' options to graduated featur...
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 add attributeName and noValueColour to Feature...
tree
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commitdiff
2017-11-07
gmungoc
JAL-2816 tweaks to feature visibility checks
tree
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commitdiff
2017-11-07
gmungoc
JAL-2808 tweak to use Iterable for set of matchers
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 JAL-2808 utility method to build combobox...
tree
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commitdiff
2017-11-07
gmungoc
JAL-2820 limit length of residue tooltip
tree
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commitdiff
2017-11-06
gmungoc
JAL-2069 cache colours generated from labels
tree
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commitdiff
2017-11-06
gmungoc
JAL-2820 include attribute value used for feature colou...
tree
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commitdiff
2017-11-06
gmungoc
JAL-2808 small tweak to getString to quote the pattern...
tree
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commitdiff
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