git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-2069 menu item now "Variable colour..." to hint at more...
[jalview.git]
/
src
/
jalview
/
2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
tree
|
commitdiff
2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressio...
tree
|
commitdiff
2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
|
commitdiff
2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
tree
|
commitdiff
2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
tree
|
commitdiff
2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
tree
|
commitdiff
2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
tree
|
commitdiff
2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
tree
|
commitdiff
2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
tree
|
commitdiff
2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
tree
|
commitdiff
2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
tree
|
commitdiff
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 methods relocated
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
tree
|
commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 refactored to extract specific consequence...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 additional sub-terms of sequence_variant added
tree
|
commitdiff
2017-11-30
gmungoc
JAL-2850 improved use of htsjdk api to read contig...
tree
|
commitdiff
2017-11-30
gmungoc
JAL-1766 additional tests for stub htsjdk wrapper
tree
|
commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
|
commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
|
commitdiff
2017-11-28
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-11-28
gmungoc
JAL-2850 MapList.isToForwardStrand added
tree
|
commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
tree
|
commitdiff
2017-11-27
gmungoc
JAL-2850 VCFLoader refactored to load VCF to contig...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 update spike to latest
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 refactoring to better handler filter by Score...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 relocate constants for compiler, add COLUMN_CO...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 don't cache i18n - MessageManager already...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range, Present...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 removed field filters; sort CSQ data by key
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 added conditions Present, NotPresent as options
tree
|
commitdiff
2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
tree
|
commitdiff
2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 refactor conversion of table data to beans...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 pass FeatureSettings to controller as array...
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2808 update conditions list on change of attribute...
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
|
commitdiff
2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2069 renamed helper method better
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2808 defer dispose to allow screen location to...
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2069 Javadoc added only
tree
|
commitdiff
2017-11-22
gmungoc
JAL-2808 capture feature attributes datatype (Character...
tree
|
commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
|
commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
|
commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
|
commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
|
commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
|
commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
|
commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
|
commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
|
commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
|
commitdiff
2017-11-17
gmungoc
JAL-2808 set (read-only) condition text field as disabled
tree
|
commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
|
commitdiff
2017-11-16
gmungoc
JAL-2069 fix minor bugs in variable setting
tree
|
commitdiff
2017-11-16
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
tree
|
commitdiff
2017-11-16
gmungoc
JAL-2069 removed unused and redundant thresholdIsMinMax
tree
|
commitdiff
2017-11-16
kiramt
JAL-2842 remove infinite loop in cursor move
bug/JAL-2842
tree
|
commitdiff
2017-11-15
kiramt
JAL-2831 Don't show cursor if position in hidden region
tree
|
commitdiff
2017-11-15
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2816 exclude filtered / thresholded out features...
tree
|
commitdiff
2017-11-15
kiramt
JAL-2811 Updated following review
bug/JAL-2811
tree
|
commitdiff
2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
tree
|
commitdiff
2017-11-15
kiramt
JAL-2834 JAL-2836 temporarily disabled wrapped mode...
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2835 take all CSQ fields; catch invalid field match...
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2835 code tidy (generic type constructors)
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2069 dialog title now 'Variable colour'
tree
|
commitdiff
2017-11-15
gmungoc
JAL- 2835 support filter on nested attribute keys
tree
|
commitdiff
2017-11-15
gmungoc
JAL-2835 add filters for VCF/VEP 'fields of interest'
tree
|
commitdiff
2017-11-15
kiramt
JAL-2831 ported to applet
tree
|
commitdiff
2017-11-14
kiramt
JAL-2831 tidies and tests
tree
|
commitdiff
next