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Merge branch 'develop' into features/JAL-1793VCF
[jalview.git] / src / jalview /
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF tree | commitdiff
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... tree | commitdiff
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... tree | commitdiff
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript... tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-12-01 gmungocJAL-2835 refactored to extract specific consequence... tree | commitdiff
2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for... tree | commitdiff
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added tree | commitdiff
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig... tree | commitdiff
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper tree | commitdiff
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
 tree | commitdiff
2017-11-30 Jim ProcterJAL-2849 fix tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop tree | commitdiff
2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added tree | commitdiff
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid tree | commitdiff
2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig... tree | commitdiff
2017-11-24 gmungocJAL-2808 update spike to latest tree | commitdiff
2017-11-24 gmungocJAL-2808 refactoring to better handler filter by Score... tree | commitdiff
2017-11-24 gmungocJAL-2808 relocate constants for compiler, add COLUMN_CO... tree | commitdiff
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... tree | commitdiff
2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... tree | commitdiff
2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key tree | commitdiff
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options tree | commitdiff
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 tree | commitdiff
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor conversion of table data to beans... tree | commitdiff
2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array... tree | commitdiff
2017-11-22 gmungocJAL-2808 update conditions list on change of attribute... tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters... tree | commitdiff
2017-11-22 gmungocJAL-2069 renamed helper method better tree | commitdiff
2017-11-22 gmungocJAL-2808 defer dispose to allow screen location to... tree | commitdiff
2017-11-22 gmungocJAL-2069 Javadoc added only tree | commitdiff
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character... tree | commitdiff
2017-11-17 Jim ProcterJAL-2698 source code licencing tree | commitdiff
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in... tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2821' into develop tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2837' into develop tree | commitdiff
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837 tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation... tree | commitdiff
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop tree | commitdiff
2017-11-17 gmungocJAL-2808 set (read-only) condition text field as disabled tree | commitdiff
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... tree | commitdiff
2017-11-16 gmungocJAL-2069 fix minor bugs in variable setting tree | commitdiff
2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831 tree | commitdiff
2017-11-16 gmungocJAL-2069 removed unused and redundant thresholdIsMinMax tree | commitdiff
2017-11-16 kiramtJAL-2842 remove infinite loop in cursor move bug/JAL-2842 tree | commitdiff
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region tree | commitdiff
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 tree | commitdiff
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features... tree | commitdiff
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811 tree | commitdiff
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at... tree | commitdiff
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode... tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL-2835 take all CSQ fields; catch invalid field match... tree | commitdiff
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... tree | commitdiff
2017-11-15 gmungocJAL-2835 code tidy (generic type constructors) tree | commitdiff
2017-11-15 gmungocJAL-2069 dialog title now 'Variable colour' tree | commitdiff
2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys tree | commitdiff
2017-11-15 gmungocJAL-2835 add filters for VCF/VEP 'fields of interest' tree | commitdiff
2017-11-15 kiramtJAL-2831 ported to applet tree | commitdiff
2017-11-14 kiramtJAL-2831 tidies and tests tree | commitdiff
2017-11-14 kiramtJAL-2831 tidy tree | commitdiff
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 tree | commitdiff
2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context... tree | commitdiff
2017-11-14 kiramtJAL-2811 Missed commit tree | commitdiff
2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too tree | commitdiff
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode tree | commitdiff
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 tree | commitdiff
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor... tree | commitdiff
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor... tree | commitdiff
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831 tree | commitdiff
2017-11-13 kiramtJAL-2811 Tidy tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into... tree | commitdiff
2017-11-13 Jim ProcterJAL-2758 remove configurable behaviour - Uniprot sequen... tree | commitdiff
2017-11-13 Jim ProcterJAL-2758 typo tree | commitdiff
2017-11-13 gmungocJAL-2738 stubs for filtering VEP and VCF fields of... tree | commitdiff
2017-11-13 kiramtJAl-2811 Working for wrapped panels too tree | commitdiff
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-13 kiramtJAL-2811 Add layer for cursor in SeqCanvas tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'imp/JAL-2810_ftsIDtab' into develop tree | commitdiff
2017-11-13 gmungocJAL-2176 removed unused Sequence.index tree | commitdiff
2017-11-13 kiramtJAL-2784 new checks for gg==null bug/JAL-2784 tree | commitdiff
2017-11-13 Jim ProcterJAL-2810 auto search checkbox state stored as user... tree | commitdiff
2017-11-13 gmungocJAL-2679 example accession changed to CAD01290 tree | commitdiff
2017-11-13 Jim ProcterJAL-2810 mainFramTabs -> tabs tree | commitdiff
2017-11-10 Jim ProcterJAL-2828 allow CalcId to match on String equivalence... doc/JAL-2494_JAL-2828_mergefindAnnotation tree | commitdiff
2017-11-10 Jim ProcterJAL-2828 refactored duplicate code for searching lists... tree | commitdiff
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