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pasted file contents should never be added to the recent URL or recent file list.
[jalview.git]
/
src
/
jalview
/
2009-11-03
jprocter
pasted file contents should never be added to the recen...
tree
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commitdiff
2009-11-02
jprocter
gracefully cope with non-standard nucleotide or amino...
tree
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commitdiff
2009-10-27
jprocter
fix null pointer exception in redraw for short sequence...
tree
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commitdiff
2009-10-13
jprocter
prompt user to enable usage stats
tree
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commitdiff
2009-10-13
jprocter
added preferences for usage stats, questionnaire check...
tree
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commitdiff
2009-10-13
jprocter
documented privacy settings, fixed potential unhandled...
tree
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commitdiff
2009-10-13
jprocter
enact on a boolean configuration option, prompting...
tree
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commitdiff
2009-10-05
jprocter
immediately show memory usage
tree
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commitdiff
2009-08-03
jprocter
fix feature creation for selected region beyond end...
tree
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commitdiff
2009-06-10
jprocter
com.boxysystems.jgogleanalytics is now an optional...
tree
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commitdiff
2009-06-10
jprocter
help message formatting
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commitdiff
2009-06-02
jprocter
applied 2009 GPL license
tree
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commitdiff
2009-06-02
jprocter
upgrade vamsas client to 0.1 (selections)
tree
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commitdiff
2009-06-02
jprocter
Google Analytics tracking backport
tree
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commitdiff
2009-06-02
jprocter
new jalview paper
tree
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commitdiff
2009-04-14
jprocter
patch to fix occasional arrayoutofbounds exception...
tree
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commitdiff
2009-04-07
jprocter
fix to ensure multiple accessions can be fetched for...
tree
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commitdiff
2008-11-04
jprocter
fix for recovery of dna/protein sequence mappings in...
tree
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commitdiff
2008-11-04
jprocter
bugfix db ref retrieve routine so it removes dead query...
tree
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commitdiff
2008-11-04
jprocter
implemented embl validation properly
tree
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commitdiff
2008-11-04
jprocter
application specific validIOformat method
tree
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commitdiff
2008-11-04
jprocter
bugfix for transfer of user defined colourscheme from...
tree
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commitdiff
2008-11-04
jprocter
application specific validIOformat method
tree
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commitdiff
2008-09-24
jprocter
fixed sequence associated annotation reading bug where...
tree
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commitdiff
2008-09-16
jprocter
java 1.1 compatibility
tree
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commitdiff
2008-09-16
jprocter
fix exception raised when JNet concise files with no...
tree
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commitdiff
2008-09-04
jprocter
ensure all URL links on the features under the residue...
Release_2_4_0
tree
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commitdiff
2008-09-04
jprocter
quickfix for applet when opening relative URLs from...
tree
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commitdiff
2008-08-29
jprocter
licencing and format applied (eclipse)
tree
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commitdiff
2008-08-29
jprocter
todo OOM
tree
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commitdiff
2008-08-29
jprocter
use OOMwarning to warn user when out of Memory occurs
tree
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commitdiff
2008-08-29
jprocter
always output to stderr for out of memory - (no depende...
tree
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commitdiff
2008-08-29
jprocter
OOM warning dialog
tree
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commitdiff
2008-08-29
jprocter
pass OutOfMemory errors upstream from EBI fetch client
tree
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commitdiff
2008-08-29
jprocter
sensibly sized example for PFAM source
tree
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commitdiff
2008-08-28
jprocter
added d martin to authors and fixed faq/discuss message
tree
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commitdiff
2008-08-28
jprocter
bugfix for Jmol and new classloader reading capability
tree
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commitdiff
2008-08-28
jprocter
author list and jalview discuss mailing list update...
tree
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commitdiff
2008-08-28
jprocter
bugfix for applet examples with 1gaq where new classloa...
tree
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commitdiff
2008-08-28
jprocter
Throw exception for unknown protocols in case of carbon...
tree
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commitdiff
2008-08-27
jprocter
applied copyright 2008
tree
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commitdiff
2008-08-26
jprocter
update Jpred3 service referenec
tree
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commitdiff
2008-08-26
jprocter
allow '|' to be entered in URL text box and added regex...
tree
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commitdiff
2008-08-26
jprocter
set title of viewer frame after file has been loaded...
tree
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commitdiff
2008-08-26
jprocter
future bug fix todo
tree
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commitdiff
2008-08-26
jprocter
new thread for initting of DBRefFetcher with latest...
tree
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commitdiff
2008-08-26
jprocter
uses shared singleton from jalview.gui.SequenceFetcher...
tree
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commitdiff
2008-08-26
jprocter
added singleton access method to retrieve the latest...
tree
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commitdiff
2008-08-26
jprocter
bugfix todo for the 'edit sequence' command
tree
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commitdiff
2008-08-26
jprocter
tooltip for fetch db refs and more generic regex for...
tree
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commitdiff
2008-08-26
jprocter
pdb xrefs added as dbrefs and as PDB file links
tree
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commitdiff
2008-08-26
jprocter
ensure successive matches to a regex have distinct...
tree
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commitdiff
2008-08-20
jprocter
Use 0f rather than NaN to specify non-valued annotation...
tree
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commitdiff
2008-08-20
jprocter
tooltip displays formatted annotation row description...
tree
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commitdiff
2008-08-19
jprocter
beginning of fix for embl/cds/highlighting IO in https...
tree
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commitdiff
2008-08-19
jprocter
fix for arrayoutofbounds bug when secondary structure...
tree
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commitdiff
2008-08-19
jprocter
better check for molecule type when identifying interna...
tree
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commitdiff
2008-08-19
jprocter
regex links for launching URL from single click on...
tree
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commitdiff
2008-08-15
jprocter
update text and version checker
tree
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commitdiff
2008-08-15
jprocter
dialog size on macs
tree
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commitdiff
2008-08-15
jprocter
check for crossreferences every time the menus are...
tree
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commitdiff
2008-08-15
jprocter
catch invalid URL link exception properly
tree
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commitdiff
2008-08-15
jprocter
increase height of dialog
tree
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commitdiff
2008-08-15
jprocter
allow '|' in regex for URL links to be recovered from...
tree
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commitdiff
2008-08-15
jprocter
safer copy constructor
tree
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commitdiff
2008-08-15
jprocter
xrefs retrieved from Uniprot
tree
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commitdiff
2008-08-13
jprocter
check for null viewport on dataset recovery
tree
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commitdiff
2008-08-13
jprocter
ensure input data can be recovered for tree and PCA...
tree
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commitdiff
2008-08-13
jprocter
do not try to cancel jobs that cannot be cancelled
tree
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commitdiff
2008-08-12
jprocter
added nojmol parameter to disable check for jmol
tree
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commitdiff
2008-08-11
jprocter
regular expression based URL link generation
tree
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commitdiff
2008-08-11
jprocter
Ensure 'None' translates into no colour scheme applied
tree
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commitdiff
2008-08-06
jprocter
generation of additional URLs for DBRefs on a sequence...
tree
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commitdiff
2008-08-06
jprocter
extra checks for datasetsequence for when getDbRefs...
tree
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commitdiff
2008-08-06
jprocter
getDBRefs now always returns DBRefArray if it exists...
tree
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commitdiff
2008-08-05
jprocter
new vamsas session does not open a dialog box
tree
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commitdiff
2008-08-05
jprocter
ensure das sequence sources are refreshed when das...
tree
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commitdiff
2008-08-05
jprocter
showbutton default is true
tree
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commitdiff
2008-08-04
jprocter
stackoverflow fix
tree
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commitdiff
2008-08-04
jprocter
pfam seed and full alignment retrieval and nicer orderi...
tree
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commitdiff
2008-08-04
jprocter
added 'showbutton' applet parameter
tree
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commitdiff
2008-08-01
jprocter
new SequenceFetcher gui and visual delay indication...
tree
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commitdiff
2008-08-01
jprocter
updated jalview version of dasobert 1.53e client and...
tree
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commitdiff
2008-08-01
jprocter
todo
tree
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commitdiff
2008-08-01
jprocter
interface for windows that display progress bars
tree
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commitdiff
2008-07-31
jprocter
use canonical DbSource name in GUI box, and ensure...
tree
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commitdiff
2008-07-31
jprocter
refactored method for registering instance of a dbSourc...
tree
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commitdiff
2008-07-31
jprocter
quick fix for the new uniprot name schema - description...
tree
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commitdiff
2008-07-31
jprocter
added specific retrieval arguments to SequneceFetcher...
tree
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commitdiff
2008-07-18
jprocter
resolve 1:many mappings for sequence associated annotat...
tree
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commitdiff
2008-07-18
jprocter
resolve 1:many mappings from feature sequence ID to...
tree
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commitdiff
2008-07-18
jprocter
allow findSeq to begin *after* a given sequence in...
tree
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commitdiff
2008-07-18
jprocter
Sequence label colour stored for each sequence group
tree
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commitdiff
2008-07-18
jprocter
comment
tree
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commitdiff
2008-07-18
jprocter
annotation file format updated to take idColour and...
tree
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commitdiff
2008-07-18
jprocter
Sequence label colour stored for each sequence group
tree
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commitdiff
2008-07-18
jprocter
User defined colourschemes are automatically generated...
tree
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commitdiff
2008-07-18
jprocter
prevent exception when no default timeout is specified
tree
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commitdiff
2008-07-11
jprocter
ensure annotationElements in non-graphical annotation...
tree
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commitdiff
2008-06-30
jprocter
javadoc and constraint to ensure annotation labels...
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commitdiff
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