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JAL-580 ensure WUSS annotation string is up to date, pair list regenerated if necessa...
[jalview.git] / src / jalview /
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date... tree | commitdiff
2011-10-28 jprocteruse stack rather than vector and throw parse exceptions tree | commitdiff
2011-10-28 jprocterJAL-580 ensure WUSS annotation is reparsed if necessary... tree | commitdiff
2011-10-28 jprocterNPE exception if annotation manually edited tree | commitdiff
2011-10-28 jprocterextend API tree | commitdiff
2011-10-28 jprocterrefactor to use model API tree | commitdiff
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes tree | commitdiff
2011-10-27 jprocter(JAL-969) efficiency tree | commitdiff
2011-10-27 jprocter(JAL-969) fix logic bug introduced during refactoring tree | commitdiff
2011-10-27 jprocter(JAL-969) removed TODOs tree | commitdiff
2011-10-27 jprocterrenamed menu entry to avoid field name clash tree | commitdiff
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change... tree | commitdiff
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... tree | commitdiff
2011-10-27 jprocter(JAL-961) refactored consensus and rna structure consen... tree | commitdiff
2011-10-27 jprocter(JAL-961) use simplified notification logic to test... tree | commitdiff
2011-10-27 jprocter(JAL-961) methods for checking calculation status tree | commitdiff
2011-10-27 jprocter(JAL-961) more calculation annotation and result object... tree | commitdiff
2011-10-27 jprocter(JAL-967) ensure annotation panel is rendered with... tree | commitdiff
2011-10-21 jprocterRefactored alignment viewport to use common base, exten... tree | commitdiff
2011-10-21 jprocternew base class to hold core visualization settings... tree | commitdiff
2011-10-21 jproctertodo tree | commitdiff
2011-10-21 jprocterstatic convenience methods for constructing and calcula... tree | commitdiff
2011-10-21 jprocteruse List rather than Vector tree | commitdiff
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise... tree | commitdiff
2011-10-21 jprocterremove unnecessary import tree | commitdiff
2011-10-21 jprocterIntroduced new AlignCalcWorker/manager interface. tree | commitdiff
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... tree | commitdiff
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... tree | commitdiff
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... tree | commitdiff
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before... tree | commitdiff
2011-10-18 jprocterbackout parts of the interface from another development... tree | commitdiff
2011-10-18 jprocter(Jalview 3) refactored Graphics2D annotation rendering... tree | commitdiff
2011-10-17 jprocter(ahem) new renderer package containing api and renderin... tree | commitdiff
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet tree | commitdiff
2011-10-11 jprocternormalised logo rendering (JAL-958) tree | commitdiff
2011-10-10 jprocter(JAL-957) change splash screen and about to HTML text... tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-07 jproctermerge Jan and Lauren's RNA GUI changes into develop... tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-10-03 jprocterremoved unnecessary parameters and changed alignment... tree | commitdiff
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724 tree | commitdiff
2011-09-27 jprocterensure server errors return a URL and response document... tree | commitdiff
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... tree | commitdiff
2011-09-27 jproctersame overzeaolous logic (JAL-915) tree | commitdiff
2011-09-27 jprocterbackout overzealous logic disabling feature links in... tree | commitdiff
2011-09-27 jprocterNPE fix tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-09-26 jproctertweaked dialog layout. should consider refactoring tree | commitdiff
2011-09-26 jproctermake news window a modal dialog on the jalview desktop... tree | commitdiff
2011-09-26 jprocteravoid deprecation and ensure dialog close event is... tree | commitdiff
2011-09-25 jprocterorganise imports tree | commitdiff
2011-09-25 jproctermore focus fixing (JAL-943) tree | commitdiff
2011-09-25 jprocterfix logic to ensure first check for news is correct... tree | commitdiff
2011-09-23 jproctertry even harder to get focus - for benefit of windows... tree | commitdiff
2011-09-23 jprocterensure blog window gets put to front after dialogs... tree | commitdiff
2011-09-22 jprocterrefactor and remove excess imports (JAL-943) tree | commitdiff
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) tree | commitdiff
2011-09-16 jprocterJAL-747 - made warning message friendlier and more... tree | commitdiff
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... tree | commitdiff
2011-09-16 jprocternumerically ataxic comments. tree | commitdiff
2011-09-16 jprocterJAL-574 added option to enable/disable 'follow selectio... tree | commitdiff
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... tree | commitdiff
2011-09-16 jprocterJAL-468 typo and label length in dialog tree | commitdiff
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm... tree | commitdiff
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort... tree | commitdiff
2011-09-15 jprocterJAL-860 fixed grammar for one structure vs many structu... tree | commitdiff
2011-09-15 jprocterJAL-854 tweaked menu layout so services appear before... tree | commitdiff
2011-09-14 jproctertypo tree | commitdiff
2011-09-14 jprocterJAL-234 - default button to reset min/max colours and... tree | commitdiff
2011-09-14 jprocterJAL-934 - refactor to use label font functions tree | commitdiff
2011-09-14 jprocterJAL-934 - refactor to use label font functions tree | commitdiff
2011-09-14 jprocterJAL-934 - standard label font functions tree | commitdiff
2011-09-14 jprocterpatch for NPE (not clear if NPE is evidence of deeper... tree | commitdiff
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... tree | commitdiff
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... tree | commitdiff
2011-09-14 jprocterfix for JAL-930 tree | commitdiff
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... tree | commitdiff
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state... tree | commitdiff
2011-08-30 jprocterpatch for JAL-731 tree | commitdiff
2011-08-30 jprocterpatch for JAL-729 - NPE avoided and cut and paste impor... tree | commitdiff
2011-08-30 jprocterJAL-915 - ensured that exceptions are not raised in... tree | commitdiff
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made... tree | commitdiff
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made... tree | commitdiff
2011-08-30 jprocterJAL-715 - conditional to hide the RSBS service editing... tree | commitdiff
2011-08-30 jprocterJAL-715 rsbs service editing tree | commitdiff
2011-08-30 jprocterJAL-715 JalviewDialog for RSBS service editing pane tree | commitdiff
2011-08-30 jprocterJAL-715 store/reset .jalview_properties setting for... tree | commitdiff
2011-08-30 jprocterJAL-715 serialise and deserialise multiple rest client... tree | commitdiff
2011-08-30 jprocterJAL-715 - notify user of parsing problems for results... tree | commitdiff
2011-08-30 jprocterretrieve URL for datasource of packed set tree | commitdiff
2011-08-30 jprocterensure parsing errors and 'lack of data' errors are... tree | commitdiff
2011-08-30 jprocterJAL-715 need to URLencode constant values when serializ... tree | commitdiff
2011-08-29 jprocterJAL-715 - grammar for warning message. tree | commitdiff
2011-08-29 jprocterJAL-919, JAL-715 - prototype service editing dialog... tree | commitdiff
2011-08-29 jprocterJAL-633, JAL-591 - refactored ArgumentI.getValue from... tree | commitdiff
2011-08-29 jprocterrefactored popup dialog boilerplate code to own class tree | commitdiff
2011-08-29 jprocterJAL-633 simple concrete parameter and option objects... tree | commitdiff
2011-08-29 jprocterJAL-633, JAL-591 - refactored ArgumentI.getValue from... tree | commitdiff
2011-08-28 janengelhardtIncluding of VARNAv-3.9; tree | commitdiff
2011-08-25 jprocterconstructor only needs GUI container interface tree | commitdiff
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