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JAL-1674 update both status bars when mousing over linked sequences
[jalview.git]
/
src
/
jalview
/
2015-02-20
gmungoc
JAL-1674 update both status bars when mousing over...
tree
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commitdiff
2015-02-19
gmungoc
JAL-845 applet colour by tree; translate as cDNA; pull...
tree
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commitdiff
2015-02-13
gmungoc
JAL-845 first rough applet SplitFrame (add parameter...
tree
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commitdiff
2015-02-12
gmungoc
JAL-1633 set file format on 'translate cDNA'
tree
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commitdiff
2015-02-12
gmungoc
Merge remote-tracking branch 'origin/merge/JAL-845_JAL...
tree
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commitdiff
2015-02-11
gmungoc
JAL-845 handling eXpand/Gather split frame views
tree
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commitdiff
2015-02-11
Jim Procter
JAL-1655 JAL-845 special support to set column width...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-845 avoid OOBException when method is called with...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-969 use AlignViewportI interface instance where...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-1654 allow font to be specified without modifying...
tree
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commitdiff
2015-02-10
Jim Procter
note about preserving/reinstating custom grid geometry...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1640 make font-size changes modify grid size again
tree
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commitdiff
2015-02-10
Jim Procter
JAL-845 - portability patch - workaround for lastToken...
tree
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commitdiff
2015-02-10
Jim Procter
added comment to @gmungoc todo about referencing PDB...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-845 @mungoc TODO comments - addAlignment needs...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1382 slightly more efficient detection of non-gap...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1382 @mungo TODO done: use StringUtils for delete...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-966 @mungo TODO complete: List rather than bare...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'features/JAL-845splitPaneMergeDevelop...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'develop' into JAL-1640_stylesettings
tree
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commitdiff
2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 new menu allowing view settings to be transfer...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 more properties moved to style bean and ration...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 JAL-966 is for boolean getter on AlignViewportI
tree
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commitdiff
2015-02-05
Charles Ofoegbu
merge commit
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 modified jalviewFileChooser to retain default...
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 Modified JalviewFileChooser to have a more...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 column mapping speed-up
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 SplitFrame key bindings delegation to AlignFram...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 preparation for awareness of AlignFrame in...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 redundant 'map to self' removed from buildSearc...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge branch 'bug/JAL-1644_Finder-logic-improvement...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 added null check for sequence description...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 setStyle method and associated tests (required...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-966 allow access to viewport interface from alignPanel
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 getters and setters for viewStyleI - note...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 copy constructor test and implementation by...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-715 tweaks for SRBS description string parsing
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1161 JAL-1606 note about awt/swing dependency in...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge commit
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 revised Finder's implementation to use a flag...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 JAL-1551 formatting/imports/remove dead code
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 updates to use get/setter on viewportI: effici...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 separated style operations into a new ViewStyl...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge branch 'bug/JAL-1644_Finder-logic-improvement...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 improvment of finder logic to include the...
tree
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commitdiff
2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC function...
features/JAL-845linkedProteinDnaEditing
tree
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commitdiff
2015-01-28
Jim Procter
JAL-1565 automatically mark query sequence as the seque...
tree
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commitdiff
2015-01-28
Jim Procter
JAL-674 patch to make Mapping.compareTransferredToR...
tree
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-23
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
JAL-1553 added help documentation and updated Annotatio...
features/JAL-1553_improvement-select-column-by-annotation-row-query-interface
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1286 don't print an exception if a non-gzip stream...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 crlf changes
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 drop the hiddenColumns flag in favour of checki...
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
gmungoc
JAL-1619 javadoc/tidy
tree
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commitdiff
2015-01-23
gmungoc
JAL-1635 show warning if less than 3 columns selected...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 tweak signature of core annotation printer...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting/imports
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
JAL-1553 fixed null pointer exception thrown in SeqCanv...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 source code formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 javadoc and mark interface overrides for clarity
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
tree
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commitdiff
2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
tree
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commitdiff
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
clean up
tree
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commitdiff
2015-01-20
Charles Ofoegbu
clean up
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Further abstractions and clean up
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
basic house keeping
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
JAL-1553 enhancement of column selection by annotation...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1636 typed collections now in ResidueProperties
tree
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commitdiff
2015-01-19
gmungoc
JAL-1636 fix for mouseover of 'X' in translated protein
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1372 i18n and tweaking set/unset representative...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 formatting
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new entry point for reading annotation files...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 formatting and javadoc
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 method to hide insertions to current sequence...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 wrappers for common checks on ColumnSelection
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 ColumnSelection method to hide insertions...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new method to get a list of insertions in...
tree
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commitdiff
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