JAL-1064 sequence database sources are stored and retrieved as lists associated with...
[jalview.git] / src / jalview /
2011-11-03 jprocter(JAL-811) - workers hold references to generated annota...
2011-11-03 jprocter(JAL-812) javadoc and api method to relayout annotation...
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot...
2011-11-03 jprocterensure we have valid fontMetrics - (NPE was raised...
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring...
2011-10-28 jprocterJAL-885 - catch race condition when rna structure width...
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati...
2011-10-28 jprocterJAL-885 more efficient calculation and robust for misma...
2011-10-28 jprocter(JAL-885 JAL-580) ignore invalid RNA structure lines
2011-10-28 jprocterJAL-902 structure conservation row for applet
2011-10-28 jprocter(JAL-970) interactive editing of RNA helix annotation...
2011-10-28 jprocter(JAL-966) efficiency
2011-10-28 jprocter(JAL-889) ensure annotation row is revalidated after...
2011-10-28 jprocter(JAL-885,JAL-580) structure consensus should only be...
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is...
2011-10-28 jprocterJAL-580 - display position where wuss parsing error...
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date...
2011-10-28 jprocteruse stack rather than vector and throw parse exceptions
2011-10-28 jprocterJAL-580 ensure WUSS annotation is reparsed if necessary...
2011-10-28 jprocterNPE exception if annotation manually edited
2011-10-28 jprocterextend API
2011-10-28 jprocterrefactor to use model API
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes
2011-10-27 jprocter(JAL-969) efficiency
2011-10-27 jprocter(JAL-969) fix logic bug introduced during refactoring
2011-10-27 jprocter(JAL-969) removed TODOs
2011-10-27 jprocterrenamed menu entry to avoid field name clash
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-27 jprocter(JAL-961) refactored consensus and rna structure consen...
2011-10-27 jprocter(JAL-961) use simplified notification logic to test...
2011-10-27 jprocter(JAL-961) methods for checking calculation status
2011-10-27 jprocter(JAL-961) more calculation annotation and result object...
2011-10-27 jprocter(JAL-967) ensure annotation panel is rendered with...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-21 jprocternew base class to hold core visualization settings...
2011-10-21 jproctertodo
2011-10-21 jprocterstatic convenience methods for constructing and calcula...
2011-10-21 jprocteruse List rather than Vector
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise...
2011-10-21 jprocterremove unnecessary import
2011-10-21 jprocterIntroduced new AlignCalcWorker/manager interface.
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade...
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups...
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before...
2011-10-18 jprocterbackout parts of the interface from another development...
2011-10-18 jprocter(Jalview 3) refactored Graphics2D annotation rendering...
2011-10-17 jprocter(ahem) new renderer package containing api and renderin...
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet
2011-10-11 jprocternormalised logo rendering (JAL-958)
2011-10-10 jprocter(JAL-957) change splash screen and about to HTML text...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-07 jproctermerge Jan and Lauren's RNA GUI changes into develop...
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-10-03 jprocterremoved unnecessary parameters and changed alignment...
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724
2011-09-27 jprocterensure server errors return a URL and response document...
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor...
2011-09-27 jproctersame overzeaolous logic (JAL-915)
2011-09-27 jprocterbackout overzealous logic disabling feature links in...
2011-09-27 jprocterNPE fix
2011-09-27 jprocterapply version 2.7 copyright
2011-09-26 jproctertweaked dialog layout. should consider refactoring
2011-09-26 jproctermake news window a modal dialog on the jalview desktop...
2011-09-26 jprocteravoid deprecation and ensure dialog close event is...
2011-09-25 jprocterorganise imports
2011-09-25 jproctermore focus fixing (JAL-943)
2011-09-25 jprocterfix logic to ensure first check for news is correct...
2011-09-23 jproctertry even harder to get focus - for benefit of windows...
2011-09-23 jprocterensure blog window gets put to front after dialogs...
2011-09-22 jprocterrefactor and remove excess imports (JAL-943)
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943)
2011-09-16 jprocterJAL-747 - made warning message friendlier and more...
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic...
2011-09-16 jprocternumerically ataxic comments.
2011-09-16 jprocterJAL-574 added option to enable/disable 'follow selectio...
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc...
2011-09-16 jprocterJAL-468 typo and label length in dialog
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm...
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort...
2011-09-15 jprocterJAL-860 fixed grammar for one structure vs many structu...
2011-09-15 jprocterJAL-854 tweaked menu layout so services appear before...
2011-09-14 jproctertypo
2011-09-14 jprocterJAL-234 - default button to reset min/max colours and...
2011-09-14 jprocterJAL-934 - refactor to use label font functions
2011-09-14 jprocterJAL-934 - refactor to use label font functions
2011-09-14 jprocterJAL-934 - standard label font functions
2011-09-14 jprocterpatch for NPE (not clear if NPE is evidence of deeper...
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations...
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations...
2011-09-14 jprocterfix for JAL-930
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations...
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state...
2011-08-30 jprocterpatch for JAL-731
2011-08-30 jprocterpatch for JAL-729 - NPE avoided and cut and paste impor...
2011-08-30 jprocterJAL-915 - ensured that exceptions are not raised in...
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made...
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made...
2011-08-30 jprocterJAL-715 - conditional to hide the RSBS service editing...
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